miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11694 5' -45.1 NC_003102.1 + 47033 0.67 0.999987
Target:  5'- aCCGuGCccGAUACA-GACGCGuccGUCGa -3'
miRNA:   3'- -GGCuCGuaCUAUGUuUUGUGC---UAGCg -5'
11694 5' -45.1 NC_003102.1 + 30032 0.69 0.999811
Target:  5'- aCGGGCAgcuUGAauaUACGAcGCAUaAUCGCg -3'
miRNA:   3'- gGCUCGU---ACU---AUGUUuUGUGcUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 36343 0.69 0.999811
Target:  5'- aUCGGGCAaauUGGUACcgc-CGCGAaCGCa -3'
miRNA:   3'- -GGCUCGU---ACUAUGuuuuGUGCUaGCG- -5'
11694 5' -45.1 NC_003102.1 + 123256 0.68 0.999854
Target:  5'- gCCGAGCAgaUGGUGCAuacGAugAUGAacUGCc -3'
miRNA:   3'- -GGCUCGU--ACUAUGU---UUugUGCUa-GCG- -5'
11694 5' -45.1 NC_003102.1 + 86167 0.68 0.999889
Target:  5'- aCGAGCGUGAUggucuugacGCAAuuGACGCccaagCGCu -3'
miRNA:   3'- gGCUCGUACUA---------UGUU--UUGUGcua--GCG- -5'
11694 5' -45.1 NC_003102.1 + 74200 0.68 0.999936
Target:  5'- -aGAGCAUGAU-CGacGAACugGucuugaaucAUCGCg -3'
miRNA:   3'- ggCUCGUACUAuGU--UUUGugC---------UAGCG- -5'
11694 5' -45.1 NC_003102.1 + 23352 0.67 0.999965
Target:  5'- -aGAGCGUaGA-ACAGuuCGCGggCGCg -3'
miRNA:   3'- ggCUCGUA-CUaUGUUuuGUGCuaGCG- -5'
11694 5' -45.1 NC_003102.1 + 91725 0.67 0.999974
Target:  5'- aCCGAaaGUAUGGUAUAGugaacgugucACACGAaccgcuUCGCg -3'
miRNA:   3'- -GGCU--CGUACUAUGUUu---------UGUGCU------AGCG- -5'
11694 5' -45.1 NC_003102.1 + 77982 0.67 0.999981
Target:  5'- uCCu-GCGUcGGUAuCAGGAUGCGAUCGUu -3'
miRNA:   3'- -GGcuCGUA-CUAU-GUUUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 102960 0.69 0.999597
Target:  5'- aCCGGuGuCGUGAUGCAuugugagAAACGucCGAUCGUg -3'
miRNA:   3'- -GGCU-C-GUACUAUGU-------UUUGU--GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 74352 0.7 0.999505
Target:  5'- uCCGAGCGUcGAUGCGAAAUgauaaauccguGCgugGAUCGa -3'
miRNA:   3'- -GGCUCGUA-CUAUGUUUUG-----------UG---CUAGCg -5'
11694 5' -45.1 NC_003102.1 + 23185 0.7 0.999505
Target:  5'- uCUGAGCGUGA------ACACG-UCGCa -3'
miRNA:   3'- -GGCUCGUACUauguuuUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 78391 0.77 0.931383
Target:  5'- aCCGAGaCGUGAcagACAAugacGGCguGCGAUCGCg -3'
miRNA:   3'- -GGCUC-GUACUa--UGUU----UUG--UGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 41383 0.75 0.972959
Target:  5'- gUCGAGCAUGAUucuCAAAuCGCGcAUCaGCg -3'
miRNA:   3'- -GGCUCGUACUAu--GUUUuGUGC-UAG-CG- -5'
11694 5' -45.1 NC_003102.1 + 19996 0.72 0.996475
Target:  5'- aCGAGCGUGAUcucguCAAaaucgGACACGGgcUCGUc -3'
miRNA:   3'- gGCUCGUACUAu----GUU-----UUGUGCU--AGCG- -5'
11694 5' -45.1 NC_003102.1 + 77649 0.71 0.998579
Target:  5'- uCCGAGCGUGA----GAACuuCGggCGCa -3'
miRNA:   3'- -GGCUCGUACUauguUUUGu-GCuaGCG- -5'
11694 5' -45.1 NC_003102.1 + 140 0.7 0.99903
Target:  5'- aCGAGCGUGAgcuCGAucaccucGACAaguaucUGGUCGCa -3'
miRNA:   3'- gGCUCGUACUau-GUU-------UUGU------GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 17189 0.7 0.99905
Target:  5'- gCGGGCAgccUGAUcaGCGAcguGCGCGA-CGCg -3'
miRNA:   3'- gGCUCGU---ACUA--UGUUu--UGUGCUaGCG- -5'
11694 5' -45.1 NC_003102.1 + 65842 0.7 0.999381
Target:  5'- uCCGAGuCGUG-UACGgAGACACGGacuuUCGUu -3'
miRNA:   3'- -GGCUC-GUACuAUGU-UUUGUGCU----AGCG- -5'
11694 5' -45.1 NC_003102.1 + 35566 0.7 0.999381
Target:  5'- gCGAGaCAUGAU-CGAAGCcgACGAgauaUCGCc -3'
miRNA:   3'- gGCUC-GUACUAuGUUUUG--UGCU----AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.