Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11694 | 5' | -45.1 | NC_003102.1 | + | 17794 | 0.66 | 0.999998 |
Target: 5'- aCCGAucGCuAUGAacaGGGGCACGAgCGCu -3' miRNA: 3'- -GGCU--CG-UACUaugUUUUGUGCUaGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 136453 | 0.68 | 0.999943 |
Target: 5'- uCCGuacgguucgaaugaaGGCA-GAUGCGAuuGACGCaGAUCGUa -3' miRNA: 3'- -GGC---------------UCGUaCUAUGUU--UUGUG-CUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 109152 | 0.68 | 0.999936 |
Target: 5'- aCUuGGCAuuuUGAUAUAAAACA-GAUCGUc -3' miRNA: 3'- -GGcUCGU---ACUAUGUUUUGUgCUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 62968 | 0.8 | 0.828742 |
Target: 5'- aCGGGCAgGAUcGCGgacuugGAGCGCGAUCGCg -3' miRNA: 3'- gGCUCGUaCUA-UGU------UUUGUGCUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 117654 | 0.66 | 0.999997 |
Target: 5'- aCCGcuggaaaaAGCcgucUGGUACAcgGAACACG-UCGCc -3' miRNA: 3'- -GGC--------UCGu---ACUAUGU--UUUGUGCuAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 135101 | 0.66 | 0.999997 |
Target: 5'- aCCGuccaaCAUGAUGCGcuuGGCcguuuCGAUCGCc -3' miRNA: 3'- -GGCuc---GUACUAUGUu--UUGu----GCUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 70453 | 0.66 | 0.99999 |
Target: 5'- aCGAGCAacauGUACAAugacGGCAUG-UCGCu -3' miRNA: 3'- gGCUCGUac--UAUGUU----UUGUGCuAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 88124 | 0.67 | 0.999987 |
Target: 5'- gCCGaAGCucagGcgGCAGGAgGCG-UCGCa -3' miRNA: 3'- -GGC-UCGua--CuaUGUUUUgUGCuAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 88045 | 0.67 | 0.999974 |
Target: 5'- aUCGAGCGgcgaUGGUAgAAGGCGuCGAagcCGCa -3' miRNA: 3'- -GGCUCGU----ACUAUgUUUUGU-GCUa--GCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 15888 | 0.68 | 0.999952 |
Target: 5'- gCCGAuucgAUGGUGgcAAugGCGAUCGCg -3' miRNA: 3'- -GGCUcg--UACUAUguUUugUGCUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 40170 | 0.67 | 0.999974 |
Target: 5'- ---uGCAUGAU-CGuuucGAGCACGAUgGCg -3' miRNA: 3'- ggcuCGUACUAuGU----UUUGUGCUAgCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 112513 | 0.67 | 0.999981 |
Target: 5'- gCCGuccaaaAGCGUGucguUGCcGAACGCGAUCu- -3' miRNA: 3'- -GGC------UCGUACu---AUGuUUUGUGCUAGcg -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 131429 | 0.66 | 0.999998 |
Target: 5'- aCCGuGCAcGAUcacCGAAGucuCGCGGUUGCa -3' miRNA: 3'- -GGCuCGUaCUAu--GUUUU---GUGCUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 79487 | 0.67 | 0.999974 |
Target: 5'- gCGAGUGUGAgucGCuuaaacuguuAGGCAauCGAUCGCg -3' miRNA: 3'- gGCUCGUACUa--UGu---------UUUGU--GCUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 31865 | 0.66 | 0.999998 |
Target: 5'- gCCGAGCAca--ACGAacccGAUACGAcgacgUCGCg -3' miRNA: 3'- -GGCUCGUacuaUGUU----UUGUGCU-----AGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 29112 | 0.67 | 0.999981 |
Target: 5'- uUGAGCGcgcaaaGAGACACGAUgGCg -3' miRNA: 3'- gGCUCGUacuaugUUUUGUGCUAgCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 35246 | 0.67 | 0.999974 |
Target: 5'- aCCGA---UGGUACAAgGGCGauCGGUCGCg -3' miRNA: 3'- -GGCUcguACUAUGUU-UUGU--GCUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 69528 | 0.68 | 0.999936 |
Target: 5'- gCCGAGUuuuUGGUGCAcgaaguuaacAACGCGcUCGUg -3' miRNA: 3'- -GGCUCGu--ACUAUGUu---------UUGUGCuAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 72320 | 0.66 | 0.999998 |
Target: 5'- gUCGcGCuucaGUACAugaucgcGGACGCGAUCGCc -3' miRNA: 3'- -GGCuCGuac-UAUGU-------UUUGUGCUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 107489 | 0.66 | 0.999995 |
Target: 5'- gCG-GCAUGAUGCuGAGCAaguacgGAUUGUc -3' miRNA: 3'- gGCuCGUACUAUGuUUUGUg-----CUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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