miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11694 5' -45.1 NC_003102.1 + 136453 0.68 0.999943
Target:  5'- uCCGuacgguucgaaugaaGGCA-GAUGCGAuuGACGCaGAUCGUa -3'
miRNA:   3'- -GGC---------------UCGUaCUAUGUU--UUGUG-CUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 135101 0.66 0.999997
Target:  5'- aCCGuccaaCAUGAUGCGcuuGGCcguuuCGAUCGCc -3'
miRNA:   3'- -GGCuc---GUACUAUGUu--UUGu----GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 134930 0.7 0.999505
Target:  5'- gCCGAcGCcgGcggGCAGcACgACGGUCGCa -3'
miRNA:   3'- -GGCU-CGuaCua-UGUUuUG-UGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 131429 0.66 0.999998
Target:  5'- aCCGuGCAcGAUcacCGAAGucuCGCGGUUGCa -3'
miRNA:   3'- -GGCuCGUaCUAu--GUUUU---GUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 126449 0.72 0.99511
Target:  5'- gCGAG-AUGAUgucGCAuuuagAGACACGGUCGUg -3'
miRNA:   3'- gGCUCgUACUA---UGU-----UUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 123256 0.68 0.999854
Target:  5'- gCCGAGCAgaUGGUGCAuacGAugAUGAacUGCc -3'
miRNA:   3'- -GGCUCGU--ACUAUGU---UUugUGCUa-GCG- -5'
11694 5' -45.1 NC_003102.1 + 121122 0.67 0.999987
Target:  5'- gCCGuGCGgcAUGCAGccaacuGGCACG-UCGCa -3'
miRNA:   3'- -GGCuCGUacUAUGUU------UUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 117654 0.66 0.999997
Target:  5'- aCCGcuggaaaaAGCcgucUGGUACAcgGAACACG-UCGCc -3'
miRNA:   3'- -GGC--------UCGu---ACUAUGU--UUUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 116260 0.67 0.999974
Target:  5'- gUGGGCGUGAaACGuAugGCGAaaGCa -3'
miRNA:   3'- gGCUCGUACUaUGUuUugUGCUagCG- -5'
11694 5' -45.1 NC_003102.1 + 112513 0.67 0.999981
Target:  5'- gCCGuccaaaAGCGUGucguUGCcGAACGCGAUCu- -3'
miRNA:   3'- -GGC------UCGUACu---AUGuUUUGUGCUAGcg -5'
11694 5' -45.1 NC_003102.1 + 109152 0.68 0.999936
Target:  5'- aCUuGGCAuuuUGAUAUAAAACA-GAUCGUc -3'
miRNA:   3'- -GGcUCGU---ACUAUGUUUUGUgCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 107489 0.66 0.999995
Target:  5'- gCG-GCAUGAUGCuGAGCAaguacgGAUUGUc -3'
miRNA:   3'- gGCuCGUACUAUGuUUUGUg-----CUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 105659 0.66 0.999995
Target:  5'- gCCGccucuGGUAaacUGcgAUGAAACGCGAUUGCc -3'
miRNA:   3'- -GGC-----UCGU---ACuaUGUUUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 102960 0.69 0.999597
Target:  5'- aCCGGuGuCGUGAUGCAuugugagAAACGucCGAUCGUg -3'
miRNA:   3'- -GGCU-C-GUACUAUGU-------UUUGU--GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 102617 0.66 0.99999
Target:  5'- aCGAGCAucaaaUGuuuUAUAuguuAACAcCGAUCGCc -3'
miRNA:   3'- gGCUCGU-----ACu--AUGUu---UUGU-GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 101067 0.7 0.999231
Target:  5'- aCCGAGCcgccgucgGUGGUACGAAucaggaACGAUCu- -3'
miRNA:   3'- -GGCUCG--------UACUAUGUUUug----UGCUAGcg -5'
11694 5' -45.1 NC_003102.1 + 100399 0.69 0.999607
Target:  5'- aUCGuGCuAUGuagaagACA--GCACGAUCGCg -3'
miRNA:   3'- -GGCuCG-UACua----UGUuuUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 98275 0.66 0.999993
Target:  5'- gCGAcGC-UGAaAUAAAACGCG-UCGCc -3'
miRNA:   3'- gGCU-CGuACUaUGUUUUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 97320 0.68 0.999854
Target:  5'- aUCGAGUAUuGUGCAAGACGgGAacCGUg -3'
miRNA:   3'- -GGCUCGUAcUAUGUUUUGUgCUa-GCG- -5'
11694 5' -45.1 NC_003102.1 + 94670 0.7 0.999231
Target:  5'- aCGAGCAgcauaaacacaaUGAUcACuauGAACACGAUCa- -3'
miRNA:   3'- gGCUCGU------------ACUA-UGu--UUUGUGCUAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.