miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11696 3' -59 NC_003102.1 + 111588 0.66 0.791458
Target:  5'- --aGCGgaggagGCGGCGGCGGCgGCg -3'
miRNA:   3'- cugCGCagcagaCGCUGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 22875 0.66 0.791458
Target:  5'- cGGCGCGUUGgagGCGAgCuGCGaacuuGCCGCg -3'
miRNA:   3'- -CUGCGCAGCagaCGCU-GcCGC-----UGGCG- -5'
11696 3' -59 NC_003102.1 + 77990 0.66 0.800225
Target:  5'- aGCGaCGUCGUCgaaaacGUGACcagcauGGCGuACCGUa -3'
miRNA:   3'- cUGC-GCAGCAGa-----CGCUG------CCGC-UGGCG- -5'
11696 3' -59 NC_003102.1 + 18482 0.66 0.800225
Target:  5'- cACGUGUCcaUC-GCGACGGCGGCagGUu -3'
miRNA:   3'- cUGCGCAGc-AGaCGCUGCCGCUGg-CG- -5'
11696 3' -59 NC_003102.1 + 72715 0.66 0.808849
Target:  5'- gGugGUGgaaaUGguaGCGGCGGCGGCgGCa -3'
miRNA:   3'- -CugCGCa---GCagaCGCUGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 127601 0.66 0.808849
Target:  5'- aGCGCuuaaGUCUGUGuacacGCGG-GACCGCg -3'
miRNA:   3'- cUGCGcag-CAGACGC-----UGCCgCUGGCG- -5'
11696 3' -59 NC_003102.1 + 87438 0.66 0.808849
Target:  5'- cGAU-CGaCGUCgGCGACGGCGGUgGCa -3'
miRNA:   3'- -CUGcGCaGCAGaCGCUGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 63066 0.66 0.808849
Target:  5'- cGACGCGagacaCGaUCU-CGGCGGCGGCaCGg -3'
miRNA:   3'- -CUGCGCa----GC-AGAcGCUGCCGCUG-GCg -5'
11696 3' -59 NC_003102.1 + 134788 0.66 0.800225
Target:  5'- cGGCGUGUUGagCgGCGACGGU--UCGCa -3'
miRNA:   3'- -CUGCGCAGCa-GaCGCUGCCGcuGGCG- -5'
11696 3' -59 NC_003102.1 + 90150 0.66 0.800225
Target:  5'- cGGCGCccaUCGUCuUGUu-CGGCG-CCGCg -3'
miRNA:   3'- -CUGCGc--AGCAG-ACGcuGCCGCuGGCG- -5'
11696 3' -59 NC_003102.1 + 113560 0.66 0.791458
Target:  5'- aGACucuaGUCGUCgaccgaauCGACguGGCGGCCGCu -3'
miRNA:   3'- -CUGcg--CAGCAGac------GCUG--CCGCUGGCG- -5'
11696 3' -59 NC_003102.1 + 31695 0.67 0.726752
Target:  5'- cGACGuCGUCGUaucggguucgUUGUGcuCGGCGGgCGCg -3'
miRNA:   3'- -CUGC-GCAGCA----------GACGCu-GCCGCUgGCG- -5'
11696 3' -59 NC_003102.1 + 20552 0.67 0.736295
Target:  5'- uGAUGUcUCGUCUcGCcaucaaGACGGUGACgGCu -3'
miRNA:   3'- -CUGCGcAGCAGA-CG------CUGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 20485 0.67 0.745752
Target:  5'- --gGCGUCGUCcGUGAuCGGUauaguauuGAUCGCa -3'
miRNA:   3'- cugCGCAGCAGaCGCU-GCCG--------CUGGCG- -5'
11696 3' -59 NC_003102.1 + 135524 0.67 0.726752
Target:  5'- --gGCGUCGggguuUUUGCGAUGGCGucGuuGCg -3'
miRNA:   3'- cugCGCAGC-----AGACGCUGCCGC--UggCG- -5'
11696 3' -59 NC_003102.1 + 130132 0.68 0.707445
Target:  5'- --gGUuUCGUCaUGCGGCGGCG-CCGa -3'
miRNA:   3'- cugCGcAGCAG-ACGCUGCCGCuGGCg -5'
11696 3' -59 NC_003102.1 + 29412 0.68 0.687897
Target:  5'- cGACGcCGaCGagUGUGGCGGCGAUCa- -3'
miRNA:   3'- -CUGC-GCaGCagACGCUGCCGCUGGcg -5'
11696 3' -59 NC_003102.1 + 112989 0.68 0.658267
Target:  5'- aACGuCGUCGUCgucgugGCGgugguggugucgGCGGUGGCgGCa -3'
miRNA:   3'- cUGC-GCAGCAGa-----CGC------------UGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 102711 0.68 0.658267
Target:  5'- uGACGaCGUCGacaaUGaCGACGGCGguGCCGa -3'
miRNA:   3'- -CUGC-GCAGCag--AC-GCUGCCGC--UGGCg -5'
11696 3' -59 NC_003102.1 + 129110 0.68 0.687897
Target:  5'- --gGCGggGUa-GCGGCGGCGGCCGa -3'
miRNA:   3'- cugCGCagCAgaCGCUGCCGCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.