miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11696 3' -59 NC_003102.1 + 81380 1.12 0.001089
Target:  5'- cGACGCGUCGUCUGCGACGGCGACCGCg -3'
miRNA:   3'- -CUGCGCAGCAGACGCUGCCGCUGGCG- -5'
11696 3' -59 NC_003102.1 + 75864 0.78 0.210476
Target:  5'- -uCGuCGUCGUCgGUGACGGCG-CCGCc -3'
miRNA:   3'- cuGC-GCAGCAGaCGCUGCCGCuGGCG- -5'
11696 3' -59 NC_003102.1 + 133919 0.76 0.2918
Target:  5'- aGACGC-UCGaCUGCGgcgacacuACGGCGGCUGCg -3'
miRNA:   3'- -CUGCGcAGCaGACGC--------UGCCGCUGGCG- -5'
11696 3' -59 NC_003102.1 + 49009 0.74 0.340911
Target:  5'- cGACGCGgCGgcgGCGACGGCGGCgaaaCGCc -3'
miRNA:   3'- -CUGCGCaGCagaCGCUGCCGCUG----GCG- -5'
11696 3' -59 NC_003102.1 + 133959 0.74 0.37155
Target:  5'- aGCGCccCGUUUGCGACGGCugagacGCCGCu -3'
miRNA:   3'- cUGCGcaGCAGACGCUGCCGc-----UGGCG- -5'
11696 3' -59 NC_003102.1 + 33097 0.74 0.379497
Target:  5'- ---cUGUCGgcgGCGGCGGCGACUGCa -3'
miRNA:   3'- cugcGCAGCagaCGCUGCCGCUGGCG- -5'
11696 3' -59 NC_003102.1 + 110373 0.73 0.420902
Target:  5'- gGGCGCGUCcacgaUCaUGuCGACGGCGuguCCGCu -3'
miRNA:   3'- -CUGCGCAGc----AG-AC-GCUGCCGCu--GGCG- -5'
11696 3' -59 NC_003102.1 + 17731 0.72 0.438211
Target:  5'- cGGCgGCGgCGgcgGCGGCGGCGGCgGCg -3'
miRNA:   3'- -CUG-CGCaGCagaCGCUGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 21333 0.71 0.511213
Target:  5'- uGCGCGUaCGcCUGCGGCG-UGuCCGCg -3'
miRNA:   3'- cUGCGCA-GCaGACGCUGCcGCuGGCG- -5'
11696 3' -59 NC_003102.1 + 40333 0.7 0.578919
Target:  5'- aACGCGcCGUUcgGCGGCaucauGGUGAUCGCg -3'
miRNA:   3'- cUGCGCaGCAGa-CGCUG-----CCGCUGGCG- -5'
11696 3' -59 NC_003102.1 + 17484 0.7 0.578919
Target:  5'- aGAuCGCGUCGgcggguaUGuCGAUGGCGggcacGCCGCa -3'
miRNA:   3'- -CU-GCGCAGCag-----AC-GCUGCCGC-----UGGCG- -5'
11696 3' -59 NC_003102.1 + 58825 0.7 0.585819
Target:  5'- aGAUGaUGcCGaCUGCGACGGCGAcgucgacgacgacaCCGCu -3'
miRNA:   3'- -CUGC-GCaGCaGACGCUGCCGCU--------------GGCG- -5'
11696 3' -59 NC_003102.1 + 37888 0.7 0.588781
Target:  5'- aGACcaaGUCuUCggGCGGCGGCGGCgGCg -3'
miRNA:   3'- -CUGcg-CAGcAGa-CGCUGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 63484 0.7 0.598672
Target:  5'- gGAuCGCGUCGUCUGCGGucguugcuguuCGG-GACUagGCg -3'
miRNA:   3'- -CU-GCGCAGCAGACGCU-----------GCCgCUGG--CG- -5'
11696 3' -59 NC_003102.1 + 32879 0.7 0.598672
Target:  5'- --aGCGUgaacgGCGACGGCGaACCGCa -3'
miRNA:   3'- cugCGCAgcagaCGCUGCCGC-UGGCG- -5'
11696 3' -59 NC_003102.1 + 40879 0.69 0.608587
Target:  5'- -uCGCGUCGUCgaacGUGACcagGGCG-CCGUc -3'
miRNA:   3'- cuGCGCAGCAGa---CGCUG---CCGCuGGCG- -5'
11696 3' -59 NC_003102.1 + 91369 0.69 0.608587
Target:  5'- gGACGCacUCGaucgagacgauUCUGa-GCGGCGGCCGCg -3'
miRNA:   3'- -CUGCGc-AGC-----------AGACgcUGCCGCUGGCG- -5'
11696 3' -59 NC_003102.1 + 134366 0.69 0.608587
Target:  5'- aAUGUGUagCGgcgGCGGCGGCGGCgGCg -3'
miRNA:   3'- cUGCGCA--GCagaCGCUGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 42241 0.69 0.638402
Target:  5'- uGCGCG-CGUCagauugUGCGACGcCGACgGCu -3'
miRNA:   3'- cUGCGCaGCAG------ACGCUGCcGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 66751 0.69 0.64834
Target:  5'- cGACGaUGaCGaCUGCGGCGGCGACg-- -3'
miRNA:   3'- -CUGC-GCaGCaGACGCUGCCGCUGgcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.