Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11696 | 3' | -59 | NC_003102.1 | + | 81380 | 1.12 | 0.001089 |
Target: 5'- cGACGCGUCGUCUGCGACGGCGACCGCg -3' miRNA: 3'- -CUGCGCAGCAGACGCUGCCGCUGGCG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 130132 | 0.68 | 0.707445 |
Target: 5'- --gGUuUCGUCaUGCGGCGGCG-CCGa -3' miRNA: 3'- cugCGcAGCAG-ACGCUGCCGCuGGCg -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 135524 | 0.67 | 0.726752 |
Target: 5'- --gGCGUCGggguuUUUGCGAUGGCGucGuuGCg -3' miRNA: 3'- cugCGCAGC-----AGACGCUGCCGC--UggCG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 31695 | 0.67 | 0.726752 |
Target: 5'- cGACGuCGUCGUaucggguucgUUGUGcuCGGCGGgCGCg -3' miRNA: 3'- -CUGC-GCAGCA----------GACGCu-GCCGCUgGCG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 113560 | 0.66 | 0.791458 |
Target: 5'- aGACucuaGUCGUCgaccgaauCGACguGGCGGCCGCu -3' miRNA: 3'- -CUGcg--CAGCAGac------GCUG--CCGCUGGCG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 90150 | 0.66 | 0.800225 |
Target: 5'- cGGCGCccaUCGUCuUGUu-CGGCG-CCGCg -3' miRNA: 3'- -CUGCGc--AGCAG-ACGcuGCCGCuGGCG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 134788 | 0.66 | 0.800225 |
Target: 5'- cGGCGUGUUGagCgGCGACGGU--UCGCa -3' miRNA: 3'- -CUGCGCAGCa-GaCGCUGCCGcuGGCG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 63066 | 0.66 | 0.808849 |
Target: 5'- cGACGCGagacaCGaUCU-CGGCGGCGGCaCGg -3' miRNA: 3'- -CUGCGCa----GC-AGAcGCUGCCGCUG-GCg -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 87438 | 0.66 | 0.808849 |
Target: 5'- cGAU-CGaCGUCgGCGACGGCGGUgGCa -3' miRNA: 3'- -CUGcGCaGCAGaCGCUGCCGCUGgCG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 29412 | 0.68 | 0.687897 |
Target: 5'- cGACGcCGaCGagUGUGGCGGCGAUCa- -3' miRNA: 3'- -CUGC-GCaGCagACGCUGCCGCUGGcg -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 112989 | 0.68 | 0.658267 |
Target: 5'- aACGuCGUCGUCgucgugGCGgugguggugucgGCGGUGGCgGCa -3' miRNA: 3'- cUGC-GCAGCAGa-----CGC------------UGCCGCUGgCG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 102711 | 0.68 | 0.658267 |
Target: 5'- uGACGaCGUCGacaaUGaCGACGGCGguGCCGa -3' miRNA: 3'- -CUGC-GCAGCag--AC-GCUGCCGC--UGGCg -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 33097 | 0.74 | 0.379497 |
Target: 5'- ---cUGUCGgcgGCGGCGGCGACUGCa -3' miRNA: 3'- cugcGCAGCagaCGCUGCCGCUGGCG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 17731 | 0.72 | 0.438211 |
Target: 5'- cGGCgGCGgCGgcgGCGGCGGCGGCgGCg -3' miRNA: 3'- -CUG-CGCaGCagaCGCUGCCGCUGgCG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 21333 | 0.71 | 0.511213 |
Target: 5'- uGCGCGUaCGcCUGCGGCG-UGuCCGCg -3' miRNA: 3'- cUGCGCA-GCaGACGCUGCcGCuGGCG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 40333 | 0.7 | 0.578919 |
Target: 5'- aACGCGcCGUUcgGCGGCaucauGGUGAUCGCg -3' miRNA: 3'- cUGCGCaGCAGa-CGCUG-----CCGCUGGCG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 63484 | 0.7 | 0.598672 |
Target: 5'- gGAuCGCGUCGUCUGCGGucguugcuguuCGG-GACUagGCg -3' miRNA: 3'- -CU-GCGCAGCAGACGCU-----------GCCgCUGG--CG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 134366 | 0.69 | 0.608587 |
Target: 5'- aAUGUGUagCGgcgGCGGCGGCGGCgGCg -3' miRNA: 3'- cUGCGCA--GCagaCGCUGCCGCUGgCG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 40879 | 0.69 | 0.608587 |
Target: 5'- -uCGCGUCGUCgaacGUGACcagGGCG-CCGUc -3' miRNA: 3'- cuGCGCAGCAGa---CGCUG---CCGCuGGCG- -5' |
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11696 | 3' | -59 | NC_003102.1 | + | 66751 | 0.69 | 0.64834 |
Target: 5'- cGACGaUGaCGaCUGCGGCGGCGACg-- -3' miRNA: 3'- -CUGC-GCaGCaGACGCUGCCGCUGgcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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