miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11696 3' -59 NC_003102.1 + 72715 0.66 0.808849
Target:  5'- gGugGUGgaaaUGguaGCGGCGGCGGCgGCa -3'
miRNA:   3'- -CugCGCa---GCagaCGCUGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 133959 0.74 0.37155
Target:  5'- aGCGCccCGUUUGCGACGGCugagacGCCGCu -3'
miRNA:   3'- cUGCGcaGCAGACGCUGCCGc-----UGGCG- -5'
11696 3' -59 NC_003102.1 + 49009 0.74 0.340911
Target:  5'- cGACGCGgCGgcgGCGACGGCGGCgaaaCGCc -3'
miRNA:   3'- -CUGCGCaGCagaCGCUGCCGCUG----GCG- -5'
11696 3' -59 NC_003102.1 + 75864 0.78 0.210476
Target:  5'- -uCGuCGUCGUCgGUGACGGCG-CCGCc -3'
miRNA:   3'- cuGC-GCAGCAGaCGCUGCCGCuGGCG- -5'
11696 3' -59 NC_003102.1 + 111588 0.66 0.791458
Target:  5'- --aGCGgaggagGCGGCGGCGGCgGCg -3'
miRNA:   3'- cugCGCagcagaCGCUGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 20485 0.67 0.745752
Target:  5'- --gGCGUCGUCcGUGAuCGGUauaguauuGAUCGCa -3'
miRNA:   3'- cugCGCAGCAGaCGCU-GCCG--------CUGGCG- -5'
11696 3' -59 NC_003102.1 + 129110 0.68 0.687897
Target:  5'- --gGCGggGUa-GCGGCGGCGGCCGa -3'
miRNA:   3'- cugCGCagCAgaCGCUGCCGCUGGCg -5'
11696 3' -59 NC_003102.1 + 42241 0.69 0.638402
Target:  5'- uGCGCG-CGUCagauugUGCGACGcCGACgGCu -3'
miRNA:   3'- cUGCGCaGCAG------ACGCUGCcGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 37888 0.7 0.588781
Target:  5'- aGACcaaGUCuUCggGCGGCGGCGGCgGCg -3'
miRNA:   3'- -CUGcg-CAGcAGa-CGCUGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 58825 0.7 0.585819
Target:  5'- aGAUGaUGcCGaCUGCGACGGCGAcgucgacgacgacaCCGCu -3'
miRNA:   3'- -CUGC-GCaGCaGACGCUGCCGCU--------------GGCG- -5'
11696 3' -59 NC_003102.1 + 32879 0.7 0.598672
Target:  5'- --aGCGUgaacgGCGACGGCGaACCGCa -3'
miRNA:   3'- cugCGCAgcagaCGCUGCCGC-UGGCG- -5'
11696 3' -59 NC_003102.1 + 18482 0.66 0.800225
Target:  5'- cACGUGUCcaUC-GCGACGGCGGCagGUu -3'
miRNA:   3'- cUGCGCAGc-AGaCGCUGCCGCUGg-CG- -5'
11696 3' -59 NC_003102.1 + 17484 0.7 0.578919
Target:  5'- aGAuCGCGUCGgcggguaUGuCGAUGGCGggcacGCCGCa -3'
miRNA:   3'- -CU-GCGCAGCag-----AC-GCUGCCGC-----UGGCG- -5'
11696 3' -59 NC_003102.1 + 77990 0.66 0.800225
Target:  5'- aGCGaCGUCGUCgaaaacGUGACcagcauGGCGuACCGUa -3'
miRNA:   3'- cUGC-GCAGCAGa-----CGCUG------CCGC-UGGCG- -5'
11696 3' -59 NC_003102.1 + 91369 0.69 0.608587
Target:  5'- gGACGCacUCGaucgagacgauUCUGa-GCGGCGGCCGCg -3'
miRNA:   3'- -CUGCGc-AGC-----------AGACgcUGCCGCUGGCG- -5'
11696 3' -59 NC_003102.1 + 110373 0.73 0.420902
Target:  5'- gGGCGCGUCcacgaUCaUGuCGACGGCGuguCCGCu -3'
miRNA:   3'- -CUGCGCAGc----AG-AC-GCUGCCGCu--GGCG- -5'
11696 3' -59 NC_003102.1 + 133919 0.76 0.2918
Target:  5'- aGACGC-UCGaCUGCGgcgacacuACGGCGGCUGCg -3'
miRNA:   3'- -CUGCGcAGCaGACGC--------UGCCGCUGGCG- -5'
11696 3' -59 NC_003102.1 + 22875 0.66 0.791458
Target:  5'- cGGCGCGUUGgagGCGAgCuGCGaacuuGCCGCg -3'
miRNA:   3'- -CUGCGCAGCagaCGCU-GcCGC-----UGGCG- -5'
11696 3' -59 NC_003102.1 + 20552 0.67 0.736295
Target:  5'- uGAUGUcUCGUCUcGCcaucaaGACGGUGACgGCu -3'
miRNA:   3'- -CUGCGcAGCAGA-CG------CUGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 127601 0.66 0.808849
Target:  5'- aGCGCuuaaGUCUGUGuacacGCGG-GACCGCg -3'
miRNA:   3'- cUGCGcag-CAGACGC-----UGCCgCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.