miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11696 3' -59 NC_003102.1 + 17484 0.7 0.578919
Target:  5'- aGAuCGCGUCGgcggguaUGuCGAUGGCGggcacGCCGCa -3'
miRNA:   3'- -CU-GCGCAGCag-----AC-GCUGCCGC-----UGGCG- -5'
11696 3' -59 NC_003102.1 + 17731 0.72 0.438211
Target:  5'- cGGCgGCGgCGgcgGCGGCGGCGGCgGCg -3'
miRNA:   3'- -CUG-CGCaGCagaCGCUGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 18482 0.66 0.800225
Target:  5'- cACGUGUCcaUC-GCGACGGCGGCagGUu -3'
miRNA:   3'- cUGCGCAGc-AGaCGCUGCCGCUGg-CG- -5'
11696 3' -59 NC_003102.1 + 20485 0.67 0.745752
Target:  5'- --gGCGUCGUCcGUGAuCGGUauaguauuGAUCGCa -3'
miRNA:   3'- cugCGCAGCAGaCGCU-GCCG--------CUGGCG- -5'
11696 3' -59 NC_003102.1 + 20552 0.67 0.736295
Target:  5'- uGAUGUcUCGUCUcGCcaucaaGACGGUGACgGCu -3'
miRNA:   3'- -CUGCGcAGCAGA-CG------CUGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 21333 0.71 0.511213
Target:  5'- uGCGCGUaCGcCUGCGGCG-UGuCCGCg -3'
miRNA:   3'- cUGCGCA-GCaGACGCUGCcGCuGGCG- -5'
11696 3' -59 NC_003102.1 + 22875 0.66 0.791458
Target:  5'- cGGCGCGUUGgagGCGAgCuGCGaacuuGCCGCg -3'
miRNA:   3'- -CUGCGCAGCagaCGCU-GcCGC-----UGGCG- -5'
11696 3' -59 NC_003102.1 + 29412 0.68 0.687897
Target:  5'- cGACGcCGaCGagUGUGGCGGCGAUCa- -3'
miRNA:   3'- -CUGC-GCaGCagACGCUGCCGCUGGcg -5'
11696 3' -59 NC_003102.1 + 31695 0.67 0.726752
Target:  5'- cGACGuCGUCGUaucggguucgUUGUGcuCGGCGGgCGCg -3'
miRNA:   3'- -CUGC-GCAGCA----------GACGCu-GCCGCUgGCG- -5'
11696 3' -59 NC_003102.1 + 32879 0.7 0.598672
Target:  5'- --aGCGUgaacgGCGACGGCGaACCGCa -3'
miRNA:   3'- cugCGCAgcagaCGCUGCCGC-UGGCG- -5'
11696 3' -59 NC_003102.1 + 33097 0.74 0.379497
Target:  5'- ---cUGUCGgcgGCGGCGGCGACUGCa -3'
miRNA:   3'- cugcGCAGCagaCGCUGCCGCUGGCG- -5'
11696 3' -59 NC_003102.1 + 37888 0.7 0.588781
Target:  5'- aGACcaaGUCuUCggGCGGCGGCGGCgGCg -3'
miRNA:   3'- -CUGcg-CAGcAGa-CGCUGCCGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 40333 0.7 0.578919
Target:  5'- aACGCGcCGUUcgGCGGCaucauGGUGAUCGCg -3'
miRNA:   3'- cUGCGCaGCAGa-CGCUG-----CCGCUGGCG- -5'
11696 3' -59 NC_003102.1 + 40879 0.69 0.608587
Target:  5'- -uCGCGUCGUCgaacGUGACcagGGCG-CCGUc -3'
miRNA:   3'- cuGCGCAGCAGa---CGCUG---CCGCuGGCG- -5'
11696 3' -59 NC_003102.1 + 42241 0.69 0.638402
Target:  5'- uGCGCG-CGUCagauugUGCGACGcCGACgGCu -3'
miRNA:   3'- cUGCGCaGCAG------ACGCUGCcGCUGgCG- -5'
11696 3' -59 NC_003102.1 + 49009 0.74 0.340911
Target:  5'- cGACGCGgCGgcgGCGACGGCGGCgaaaCGCc -3'
miRNA:   3'- -CUGCGCaGCagaCGCUGCCGCUG----GCG- -5'
11696 3' -59 NC_003102.1 + 58825 0.7 0.585819
Target:  5'- aGAUGaUGcCGaCUGCGACGGCGAcgucgacgacgacaCCGCu -3'
miRNA:   3'- -CUGC-GCaGCaGACGCUGCCGCU--------------GGCG- -5'
11696 3' -59 NC_003102.1 + 63066 0.66 0.808849
Target:  5'- cGACGCGagacaCGaUCU-CGGCGGCGGCaCGg -3'
miRNA:   3'- -CUGCGCa----GC-AGAcGCUGCCGCUG-GCg -5'
11696 3' -59 NC_003102.1 + 63484 0.7 0.598672
Target:  5'- gGAuCGCGUCGUCUGCGGucguugcuguuCGG-GACUagGCg -3'
miRNA:   3'- -CU-GCGCAGCAGACGCU-----------GCCgCUGG--CG- -5'
11696 3' -59 NC_003102.1 + 66751 0.69 0.64834
Target:  5'- cGACGaUGaCGaCUGCGGCGGCGACg-- -3'
miRNA:   3'- -CUGC-GCaGCaGACGCUGCCGCUGgcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.