miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 60689 0.66 0.999999
Target:  5'- aUGAACaUGUUCGACg--UCG-AAACa -3'
miRNA:   3'- -ACUUGcACAGGCUGaaaAGCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 121214 0.66 0.999998
Target:  5'- cGGGCuuuGUGUCCGAU--UUCGUGcccAACa -3'
miRNA:   3'- aCUUG---CACAGGCUGaaAAGCAU---UUGa -5'
11699 3' -44.4 NC_003102.1 + 67211 0.66 0.999998
Target:  5'- cGAACcUGgCCGACUUUUCGa----- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCauuuga -5'
11699 3' -44.4 NC_003102.1 + 23728 0.66 0.999997
Target:  5'- aGAACaGUGUCgGGCUggcgugCGUAAAgUa -3'
miRNA:   3'- aCUUG-CACAGgCUGAaaa---GCAUUUgA- -5'
11699 3' -44.4 NC_003102.1 + 55255 0.66 0.999997
Target:  5'- aUGAACuUGUUgGACUUUUUaUGAACa -3'
miRNA:   3'- -ACUUGcACAGgCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 76486 0.67 0.999995
Target:  5'- uUGAACGcGUCUGACUUUcuaCGUuauuGCg -3'
miRNA:   3'- -ACUUGCaCAGGCUGAAAa--GCAuu--UGa -5'
11699 3' -44.4 NC_003102.1 + 132812 0.67 0.999995
Target:  5'- aUGAACaUGUuaGACUUUUaGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAgCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 55000 0.67 0.999995
Target:  5'- aUGAACuUGUuaGACUUUUUaGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAG-CAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 74911 0.67 0.999993
Target:  5'- gGAACGgg-CCGAUUcgugCGUAGACUu -3'
miRNA:   3'- aCUUGCacaGGCUGAaaa-GCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 132370 0.67 0.999993
Target:  5'- aUGAACuUGUuaGACUUUUCaUAAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 55787 0.67 0.99999
Target:  5'- uUGAACuUGUCUGACgUUUCGcuAACa -3'
miRNA:   3'- -ACUUGcACAGGCUGaAAAGCauUUGa -5'
11699 3' -44.4 NC_003102.1 + 54968 0.67 0.99999
Target:  5'- aUGAACaUGUuaGACUUUUCaUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132122 0.67 0.99999
Target:  5'- aUGAACuUGUuaGACUUUUCaUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132473 0.67 0.99999
Target:  5'- aUGAACuUGUuaGACUUUUCaUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132242 0.67 0.99999
Target:  5'- aUGAACuUGUuaGACUUUUCaUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 55644 0.67 0.99999
Target:  5'- aUGAACuUGUuaGACUUUUCaUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 121814 0.67 0.99999
Target:  5'- cGAACcUGgCCGACUUUUCGaUAAGu- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGC-AUUUga -5'
11699 3' -44.4 NC_003102.1 + 55612 0.67 0.999986
Target:  5'- aUGAACuUGUUaaACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAGgcUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 117849 0.67 0.999986
Target:  5'- aUGAuCGUGUCCGACUUgUCc------ -3'
miRNA:   3'- -ACUuGCACAGGCUGAAaAGcauuuga -5'
11699 3' -44.4 NC_003102.1 + 33335 0.68 0.99998
Target:  5'- gGAugGUGUCaaACUcagagUCGUGGACg -3'
miRNA:   3'- aCUugCACAGgcUGAaa---AGCAUUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.