miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 5' -47.3 NC_003102.1 + 104454 0.66 0.999629
Target:  5'- cGAuGGCuuauCGAAAAGUCAacCAGGUUa -3'
miRNA:   3'- aCU-CUGu---GCUUUUCAGUcuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 98037 0.66 0.999629
Target:  5'- ----uCAUGAAAAGUCAGACAaGUUg -3'
miRNA:   3'- acucuGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 132034 0.66 0.999629
Target:  5'- -----aACGAAAAGUCAGACAaGUUa -3'
miRNA:   3'- acucugUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 67045 0.66 0.999531
Target:  5'- aUGA-AUAuCGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- -ACUcUGU-GCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 132946 0.66 0.999531
Target:  5'- aUGuu-CACGAAAAGUCuaACAGGUUc -3'
miRNA:   3'- -ACucuGUGCUUUUCAGucUGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 132866 0.66 0.999531
Target:  5'- aUGuu-CACGAAAAGUCuaACAGGUUc -3'
miRNA:   3'- -ACucuGUGCUUUUCAGucUGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 10677 0.66 0.999531
Target:  5'- ----cUACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- acucuGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 26302 0.66 0.999531
Target:  5'- --cGACauguuaACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- acuCUG------UGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 137219 0.66 0.999412
Target:  5'- ----uUAUGAAAAGUCcGACAGGUUc -3'
miRNA:   3'- acucuGUGCUUUUCAGuCUGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 55963 0.66 0.999412
Target:  5'- aUGu--UACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- -ACucuGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 112640 0.67 0.999091
Target:  5'- -aAGAUuauuuuAUGAAAAGUCAGcCAGGUUc -3'
miRNA:   3'- acUCUG------UGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 56054 0.67 0.999091
Target:  5'- aUGuu-UACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- -ACucuGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 118421 0.67 0.998881
Target:  5'- cGuGugGCaGAccGUCAGGCAGGUg- -3'
miRNA:   3'- aCuCugUGcUUuuCAGUCUGUCCAaa -5'
11699 5' -47.3 NC_003102.1 + 76637 0.67 0.998631
Target:  5'- -----aACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- acucugUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 112049 0.67 0.998631
Target:  5'- aGAGACAUGuuuauuGG-UAGACAGGUc- -3'
miRNA:   3'- aCUCUGUGCuuu---UCaGUCUGUCCAaa -5'
11699 5' -47.3 NC_003102.1 + 103626 0.67 0.997988
Target:  5'- aUGuu-CACGAAAAGUCGGACGcGUUc -3'
miRNA:   3'- -ACucuGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 104692 0.68 0.99758
Target:  5'- aGuAGAUcuaaacaugucaACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- aC-UCUG------------UGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 103711 0.68 0.99758
Target:  5'- -cGGACAUGucgauggucaAAAAGUCGGcCAGGUUUg -3'
miRNA:   3'- acUCUGUGC----------UUUUCAGUCuGUCCAAA- -5'
11699 5' -47.3 NC_003102.1 + 10846 0.68 0.995928
Target:  5'- -cAGuuCAUGAAAAGUCAGACAaGUUUg -3'
miRNA:   3'- acUCu-GUGCUUUUCAGUCUGUcCAAA- -5'
11699 5' -47.3 NC_003102.1 + 112746 0.68 0.995506
Target:  5'- -uGGACuaauuuaacaugucaACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- acUCUG---------------UGCUUUUCAGUCuGUCCAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.