miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11700 5' -61.6 NC_003102.1 + 32442 0.66 0.674647
Target:  5'- cGCGACcguuACCGUgguCGCgACCGUaGCCGUCa -3'
miRNA:   3'- -UGUUG----UGGCG---GCGgUGGCGgUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 51573 0.66 0.674647
Target:  5'- -gAugACCGUCacauguuuuuGUCGCCGCCGuuGUCg -3'
miRNA:   3'- ugUugUGGCGG----------CGGUGGCGGUggCGG- -5'
11700 5' -61.6 NC_003102.1 + 40147 0.66 0.674647
Target:  5'- cACAAgAUCGCCucGUCGCC-CCAucUCGCCg -3'
miRNA:   3'- -UGUUgUGGCGG--CGGUGGcGGU--GGCGG- -5'
11700 5' -61.6 NC_003102.1 + 65649 0.66 0.674647
Target:  5'- uACGACAaaaugcaaaaCGCCGUCAa-GCgCAUCGCCa -3'
miRNA:   3'- -UGUUGUg---------GCGGCGGUggCG-GUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 72293 0.66 0.664818
Target:  5'- -aAACACCGUgucgggcaCGUCGCUGCCGCC-Ca -3'
miRNA:   3'- ugUUGUGGCG--------GCGGUGGCGGUGGcGg -5'
11700 5' -61.6 NC_003102.1 + 17880 0.66 0.664818
Target:  5'- ---nCGCCGCCGCCGCCuucuauucUCACCGa- -3'
miRNA:   3'- uguuGUGGCGGCGGUGGc-------GGUGGCgg -5'
11700 5' -61.6 NC_003102.1 + 71285 0.66 0.654964
Target:  5'- ---uUACCGCCGCUACCGaa--CGUCa -3'
miRNA:   3'- uguuGUGGCGGCGGUGGCggugGCGG- -5'
11700 5' -61.6 NC_003102.1 + 59953 0.66 0.645094
Target:  5'- uUAAUuuCCGCCGUCGCUGCcCACaCGUa -3'
miRNA:   3'- uGUUGu-GGCGGCGGUGGCG-GUG-GCGg -5'
11700 5' -61.6 NC_003102.1 + 99339 0.66 0.645094
Target:  5'- uCAACACCGCCGCgguuuccaaGCCucaGUCAUCGUUu -3'
miRNA:   3'- uGUUGUGGCGGCGg--------UGG---CGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 49042 0.66 0.644106
Target:  5'- uGCGGCG-CGUauggcuaucucuuCGCCuCCGCCACUGUCu -3'
miRNA:   3'- -UGUUGUgGCG-------------GCGGuGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 81568 0.66 0.635213
Target:  5'- gGCGAgGCUGUCGUCgaagucgacGCgGUCGCCGUCg -3'
miRNA:   3'- -UGUUgUGGCGGCGG---------UGgCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 44948 0.66 0.635213
Target:  5'- uCAAUcuuuCCGCCGUCACCGaUUACaCGCUc -3'
miRNA:   3'- uGUUGu---GGCGGCGGUGGC-GGUG-GCGG- -5'
11700 5' -61.6 NC_003102.1 + 119243 0.66 0.635213
Target:  5'- gGCAuGCACCaacaGCaCGCCACCGCgaucacgacgacUAUCGCUa -3'
miRNA:   3'- -UGU-UGUGG----CG-GCGGUGGCG------------GUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 135251 0.66 0.635213
Target:  5'- cCAGcCACCGCCGUCGUCGCCcUCuCCa -3'
miRNA:   3'- uGUU-GUGGCGGCGGUGGCGGuGGcGG- -5'
11700 5' -61.6 NC_003102.1 + 3742 0.66 0.625331
Target:  5'- -gGugGCUGCUGCUGCUGCUGuuGCUc -3'
miRNA:   3'- ugUugUGGCGGCGGUGGCGGUggCGG- -5'
11700 5' -61.6 NC_003102.1 + 42186 0.66 0.625331
Target:  5'- aACGuACGCUucaUCGCCuCCGCCGCCGUUc -3'
miRNA:   3'- -UGU-UGUGGc--GGCGGuGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 48790 0.66 0.625331
Target:  5'- ----aGCCGUCGCUACUGCUcUCGUCg -3'
miRNA:   3'- uguugUGGCGGCGGUGGCGGuGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 20363 0.67 0.615453
Target:  5'- uCAGUGCCuUCGCCauaGCCGUCACCGUCu -3'
miRNA:   3'- uGUUGUGGcGGCGG---UGGCGGUGGCGG- -5'
11700 5' -61.6 NC_003102.1 + 40652 0.67 0.615453
Target:  5'- -aGAUAUagaCGUUACCGCCGCCGCg -3'
miRNA:   3'- ugUUGUGgcgGCGGUGGCGGUGGCGg -5'
11700 5' -61.6 NC_003102.1 + 133734 0.67 0.59574
Target:  5'- uCGGgGCCGCgucgcaGCCGCCGUaguguCGCCGCa -3'
miRNA:   3'- uGUUgUGGCGg-----CGGUGGCG-----GUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.