miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11702 5' -52.9 NC_003102.1 + 137389 0.66 0.963442
Target:  5'- gUCGGccGCGuUCGAUUCAAACGUGU-CUg -3'
miRNA:   3'- -AGCCa-CGC-GGCUGAGUUUGCGUAuGA- -5'
11702 5' -52.9 NC_003102.1 + 137313 0.66 0.963442
Target:  5'- gUCGGccGCGuUCGAUUCAAACGUGU-CUg -3'
miRNA:   3'- -AGCCa-CGC-GGCUGAGUUUGCGUAuGA- -5'
11702 5' -52.9 NC_003102.1 + 129173 0.66 0.969907
Target:  5'- gCGGccgGCGCCGACggagcagUAGACGCcgAa- -3'
miRNA:   3'- aGCCa--CGCGGCUGa------GUUUGCGuaUga -5'
11702 5' -52.9 NC_003102.1 + 123166 0.66 0.963442
Target:  5'- gUCGGUGCGauauUUCAAGCGCAa--- -3'
miRNA:   3'- -AGCCACGCggcuGAGUUUGCGUauga -5'
11702 5' -52.9 NC_003102.1 + 118815 0.67 0.947736
Target:  5'- cUCGGaccGCaGCCGAguuuCUC-AACGCGUGCa -3'
miRNA:   3'- -AGCCa--CG-CGGCU----GAGuUUGCGUAUGa -5'
11702 5' -52.9 NC_003102.1 + 110420 1.09 0.005028
Target:  5'- uUCGGUGCGCCGACUCAAACGCAUACUg -3'
miRNA:   3'- -AGCCACGCGGCUGAGUUUGCGUAUGA- -5'
11702 5' -52.9 NC_003102.1 + 94729 0.67 0.956065
Target:  5'- gUUGGcGCGUCGAUUCGcGCuCAUACUc -3'
miRNA:   3'- -AGCCaCGCGGCUGAGUuUGcGUAUGA- -5'
11702 5' -52.9 NC_003102.1 + 93942 0.68 0.922578
Target:  5'- aUCuG-GCGCgGACUCuu-CGCAUGCUc -3'
miRNA:   3'- -AGcCaCGCGgCUGAGuuuGCGUAUGA- -5'
11702 5' -52.9 NC_003102.1 + 92099 0.71 0.783388
Target:  5'- aCGGcgGCGCCGGCgUCGGAgGCGaACUu -3'
miRNA:   3'- aGCCa-CGCGGCUG-AGUUUgCGUaUGA- -5'
11702 5' -52.9 NC_003102.1 + 78607 0.68 0.933394
Target:  5'- cCGGcgGCGuuGAUaUCAAACGCAucgUACa -3'
miRNA:   3'- aGCCa-CGCggCUG-AGUUUGCGU---AUGa -5'
11702 5' -52.9 NC_003102.1 + 75856 0.68 0.92201
Target:  5'- gUCGGUGacggcgcCGCCGAUuUCGAGCGUAUugaACg -3'
miRNA:   3'- -AGCCAC-------GCGGCUG-AGUUUGCGUA---UGa -5'
11702 5' -52.9 NC_003102.1 + 58965 0.66 0.972813
Target:  5'- aUCGGUGCGCgaUGugUCGGuUGCAa--- -3'
miRNA:   3'- -AGCCACGCG--GCugAGUUuGCGUauga -5'
11702 5' -52.9 NC_003102.1 + 47656 0.73 0.703897
Target:  5'- aCGGUGCGCCGAaUCGAAUaGCAa--- -3'
miRNA:   3'- aGCCACGCGGCUgAGUUUG-CGUauga -5'
11702 5' -52.9 NC_003102.1 + 39318 0.67 0.956065
Target:  5'- aCGGUgcGCGCCGuCUC--GCGCAaACc -3'
miRNA:   3'- aGCCA--CGCGGCuGAGuuUGCGUaUGa -5'
11702 5' -52.9 NC_003102.1 + 34444 0.69 0.891155
Target:  5'- ----cGCGCCGcgGCUCAaucgaGACGCGUGCa -3'
miRNA:   3'- agccaCGCGGC--UGAGU-----UUGCGUAUGa -5'
11702 5' -52.9 NC_003102.1 + 34030 0.68 0.933394
Target:  5'- -aGGUGCGUaCGAUUUuGACGCGUGa- -3'
miRNA:   3'- agCCACGCG-GCUGAGuUUGCGUAUga -5'
11702 5' -52.9 NC_003102.1 + 29659 0.66 0.963442
Target:  5'- gCGGUGUGCCGuCU-GGACgGCAaACUg -3'
miRNA:   3'- aGCCACGCGGCuGAgUUUG-CGUaUGA- -5'
11702 5' -52.9 NC_003102.1 + 20671 0.67 0.952022
Target:  5'- cCGGUcuuGuCGCCGAUUCGAuACGCGgACg -3'
miRNA:   3'- aGCCA---C-GCGGCUGAGUU-UGCGUaUGa -5'
11702 5' -52.9 NC_003102.1 + 20100 0.67 0.952022
Target:  5'- ----cGCGCCGAgUUucACGCGUACa -3'
miRNA:   3'- agccaCGCGGCUgAGuuUGCGUAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.