miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11863 5' -53.9 NC_003266.2 + 21901 0.66 0.679896
Target:  5'- cGCGucaGUUGCAgggcGCCcaGCAGGUCgGGC-GCg -3'
miRNA:   3'- -CGC---UAACGU----UGG--UGUUCGGgCCGaCG- -5'
11863 5' -53.9 NC_003266.2 + 15763 0.66 0.656987
Target:  5'- gGCGA-UGCGccGCCGCcGGCUCuuGGCgcggGCg -3'
miRNA:   3'- -CGCUaACGU--UGGUGuUCGGG--CCGa---CG- -5'
11863 5' -53.9 NC_003266.2 + 3664 0.66 0.655838
Target:  5'- uGCGGcgGCAGCUGCGuccaccgacgaggAGCUCagGGUUGCa -3'
miRNA:   3'- -CGCUaaCGUUGGUGU-------------UCGGG--CCGACG- -5'
11863 5' -53.9 NC_003266.2 + 19753 0.66 0.645489
Target:  5'- aGCGAggGC-GCCACca-CCCGGCcGUu -3'
miRNA:   3'- -CGCUaaCGuUGGUGuucGGGCCGaCG- -5'
11863 5' -53.9 NC_003266.2 + 16443 0.66 0.645489
Target:  5'- gGCGGUUGCGcuuGCCguaaGCAAacucGCCCaGGCgcucgGCc -3'
miRNA:   3'- -CGCUAACGU---UGG----UGUU----CGGG-CCGa----CG- -5'
11863 5' -53.9 NC_003266.2 + 5202 0.66 0.633977
Target:  5'- uGCGAgggUGC-GCUuCAGGCucauCCGGCUGg -3'
miRNA:   3'- -CGCUa--ACGuUGGuGUUCG----GGCCGACg -5'
11863 5' -53.9 NC_003266.2 + 3826 0.66 0.622464
Target:  5'- -----aGCAGaCGCGGGCCgCGGUUGCc -3'
miRNA:   3'- cgcuaaCGUUgGUGUUCGG-GCCGACG- -5'
11863 5' -53.9 NC_003266.2 + 7287 0.66 0.622464
Target:  5'- uGCGAgugaUGCGgaaagGCUgggGCAccucGGCCCGGUUGUu -3'
miRNA:   3'- -CGCUa---ACGU-----UGG---UGU----UCGGGCCGACG- -5'
11863 5' -53.9 NC_003266.2 + 9774 0.67 0.61096
Target:  5'- cGCGGccgUGCAuacgcgugaGCC-CAAaCCCGcGCUGCg -3'
miRNA:   3'- -CGCUa--ACGU---------UGGuGUUcGGGC-CGACG- -5'
11863 5' -53.9 NC_003266.2 + 6663 0.67 0.599477
Target:  5'- uGCGAg-GgGGCgAgGAGCCCGGCUcCg -3'
miRNA:   3'- -CGCUaaCgUUGgUgUUCGGGCCGAcG- -5'
11863 5' -53.9 NC_003266.2 + 24846 0.67 0.57661
Target:  5'- cGgGAUccUGcCGGCCACcuGCuCCGcGCUGCc -3'
miRNA:   3'- -CgCUA--AC-GUUGGUGuuCG-GGC-CGACG- -5'
11863 5' -53.9 NC_003266.2 + 10091 0.67 0.57661
Target:  5'- gGCGGUagaGCGGCCAUc-GCUCGGUgGCg -3'
miRNA:   3'- -CGCUAa--CGUUGGUGuuCGGGCCGaCG- -5'
11863 5' -53.9 NC_003266.2 + 23180 0.67 0.564115
Target:  5'- gGCGGagGCGACgggcucuCGC-GGCCCGGCgggugGCu -3'
miRNA:   3'- -CGCUaaCGUUG-------GUGuUCGGGCCGa----CG- -5'
11863 5' -53.9 NC_003266.2 + 15613 0.67 0.56185
Target:  5'- gGUGGUgcGCGACCGCAcgcGGCCCuugagggcgccccaGGgaGCg -3'
miRNA:   3'- -CGCUAa-CGUUGGUGU---UCGGG--------------CCgaCG- -5'
11863 5' -53.9 NC_003266.2 + 16941 0.68 0.553944
Target:  5'- cGUGGUagaaGCGcguGCCGCGguAGCCCGGCgUGg -3'
miRNA:   3'- -CGCUAa---CGU---UGGUGU--UCGGGCCG-ACg -5'
11863 5' -53.9 NC_003266.2 + 15706 0.68 0.542708
Target:  5'- -aGAgccgGCGGCgGCGcaucGCCCGGCgGCa -3'
miRNA:   3'- cgCUaa--CGUUGgUGUu---CGGGCCGaCG- -5'
11863 5' -53.9 NC_003266.2 + 7923 0.68 0.542708
Target:  5'- -----aGCGGCCACAGuGCUCGcaacGCUGCa -3'
miRNA:   3'- cgcuaaCGUUGGUGUU-CGGGC----CGACG- -5'
11863 5' -53.9 NC_003266.2 + 3648 0.68 0.530438
Target:  5'- aGCGccgUGCGcggaaugGCCAUggGCgCCGGCUa- -3'
miRNA:   3'- -CGCua-ACGU-------UGGUGuuCG-GGCCGAcg -5'
11863 5' -53.9 NC_003266.2 + 24668 0.68 0.50949
Target:  5'- ----cUGCuGCCACAcGCCCauGGCUGUc -3'
miRNA:   3'- cgcuaACGuUGGUGUuCGGG--CCGACG- -5'
11863 5' -53.9 NC_003266.2 + 27232 0.69 0.498604
Target:  5'- ----cUGCAACCAC---CCCGGcCUGCa -3'
miRNA:   3'- cgcuaACGUUGGUGuucGGGCC-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.