miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11865 3' -58.8 NC_003266.2 + 23118 1.11 0.00015
Target:  5'- gGAACAACCACCGCCGCCGCAGCAGCCg -3'
miRNA:   3'- -CUUGUUGGUGGCGGCGGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 23254 0.69 0.241705
Target:  5'- --cCAGCCAcCCGCCggGCCGCGagAGCCc -3'
miRNA:   3'- cuuGUUGGU-GGCGG--CGGCGUcgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 15765 0.69 0.24814
Target:  5'- cGGGCGAUgCGCCGCCGCCgGCucuuggcGCGGgCg -3'
miRNA:   3'- -CUUGUUG-GUGGCGGCGG-CGu------CGUCgG- -5'
11865 3' -58.8 NC_003266.2 + 11416 0.66 0.407364
Target:  5'- gGAACAGCUG-CGCCGUCaGCGGUuuGCUg -3'
miRNA:   3'- -CUUGUUGGUgGCGGCGG-CGUCGu-CGG- -5'
11865 3' -58.8 NC_003266.2 + 26016 0.77 0.07024
Target:  5'- -cACuGCCGCCGCCGCCGCuguggauuuucuAGCuGCUg -3'
miRNA:   3'- cuUGuUGGUGGCGGCGGCG------------UCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 13363 0.73 0.121557
Target:  5'- uGGCGGCCucgggcACCGCUGCgGCAGCAcCCg -3'
miRNA:   3'- cUUGUUGG------UGGCGGCGgCGUCGUcGG- -5'
11865 3' -58.8 NC_003266.2 + 10921 0.72 0.160992
Target:  5'- -cACGGCgGCCGCgGCgGUAGUGGCUg -3'
miRNA:   3'- cuUGUUGgUGGCGgCGgCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 14842 0.72 0.160992
Target:  5'- --uCAGCCuugGCCGCCGCCacuGCuGCGGCg -3'
miRNA:   3'- cuuGUUGG---UGGCGGCGG---CGuCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 17484 0.71 0.18477
Target:  5'- aAACGGCCGCgUGCCGUguCGCGG-AGCCa -3'
miRNA:   3'- cUUGUUGGUG-GCGGCG--GCGUCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 31243 0.7 0.229253
Target:  5'- uGAACuuCUGgCGCUGCUGCAGgAGCUc -3'
miRNA:   3'- -CUUGuuGGUgGCGGCGGCGUCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 3884 0.7 0.217348
Target:  5'- uGGCAACCGCgGcCCGCgucugcuccUGCAGCugAGCCa -3'
miRNA:   3'- cUUGUUGGUGgC-GGCG---------GCGUCG--UCGG- -5'
11865 3' -58.8 NC_003266.2 + 17241 0.71 0.169685
Target:  5'- uGAUGGCgCGCCGCCGCCgguggggGUGGCGGCg -3'
miRNA:   3'- cUUGUUG-GUGGCGGCGG-------CGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 15941 0.83 0.023427
Target:  5'- gGGACAugcuggcuaugGCCGCUGCCGCCGCcGUGGCCg -3'
miRNA:   3'- -CUUGU-----------UGGUGGCGGCGGCGuCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 8797 0.7 0.223233
Target:  5'- -cGCGGCCACCGUgGagCGCGcCGGCCg -3'
miRNA:   3'- cuUGUUGGUGGCGgCg-GCGUcGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 16150 0.77 0.066245
Target:  5'- -----uUCACCGCCGCCGCGG-GGCCg -3'
miRNA:   3'- cuuguuGGUGGCGGCGGCGUCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 10711 0.71 0.169685
Target:  5'- gGGGCAGCCA-CGCCcucguuaGCCGCGGaauuCGGCCg -3'
miRNA:   3'- -CUUGUUGGUgGCGG-------CGGCGUC----GUCGG- -5'
11865 3' -58.8 NC_003266.2 + 3683 0.7 0.229253
Target:  5'- uGGCGGCagaaGCagcaGCUGCgGCGGCAGCUg -3'
miRNA:   3'- cUUGUUGg---UGg---CGGCGgCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 17750 0.69 0.241705
Target:  5'- aGGCGGCUguugauCUGCCGCUGCA-CGGCCu -3'
miRNA:   3'- cUUGUUGGu-----GGCGGCGGCGUcGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 13922 0.77 0.07024
Target:  5'- -uGCAucGCCGCCGCCGCCGCcauuGCCu -3'
miRNA:   3'- cuUGU--UGGUGGCGGCGGCGucguCGG- -5'
11865 3' -58.8 NC_003266.2 + 8268 0.72 0.148083
Target:  5'- --uCAACCGCgCGCCGCCGCu---GCCc -3'
miRNA:   3'- cuuGUUGGUG-GCGGCGGCGucguCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.