Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 14777 | 0.66 | 0.784384 |
Target: 5'- gCGCcGCAGCAGUGgCGGCG-GCcaAGGCu -3' miRNA: 3'- -GCGaUGUUGUCGUgGUUGCaCG--UCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 14029 | 0.66 | 0.781206 |
Target: 5'- uCGCUgaacuaccagaacgACcACAGCaacuuucugaccACCGugGUGCAGAa -3' miRNA: 3'- -GCGA--------------UGuUGUCG------------UGGUugCACGUCUg -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 16616 | 0.66 | 0.762906 |
Target: 5'- gCGCUugGGCaccaucAGCugCAugGUGgGGuACa -3' miRNA: 3'- -GCGAugUUG------UCGugGUugCACgUC-UG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 8190 | 0.66 | 0.756338 |
Target: 5'- aCGCUGCGgagucaggucaguggGCAGCGgCGGCGcGCGGu- -3' miRNA: 3'- -GCGAUGU---------------UGUCGUgGUUGCaCGUCug -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 22032 | 0.66 | 0.751931 |
Target: 5'- aCGCU-CGcCAGCACCGuaGCGUcGguGAUc -3' miRNA: 3'- -GCGAuGUuGUCGUGGU--UGCA-CguCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 25067 | 0.66 | 0.751931 |
Target: 5'- gGUUGCAGCGGCAgUGGCacucgaGCAGGCc -3' miRNA: 3'- gCGAUGUUGUCGUgGUUGca----CGUCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 13861 | 0.66 | 0.729577 |
Target: 5'- gGCaaugGCGGCGGCGgCGGCGaUGCAGcCc -3' miRNA: 3'- gCGa---UGUUGUCGUgGUUGC-ACGUCuG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 8466 | 0.66 | 0.729577 |
Target: 5'- gGC-ACGuCGGCGCCG-CGcGCGGGCa -3' miRNA: 3'- gCGaUGUuGUCGUGGUuGCaCGUCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 20124 | 0.67 | 0.718226 |
Target: 5'- uCGUUGC-GCAGCaugGCCucaAGCGUGgAGGCg -3' miRNA: 3'- -GCGAUGuUGUCG---UGG---UUGCACgUCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 18222 | 0.67 | 0.718226 |
Target: 5'- -----gGACAGCAgCGGCG-GCGGACa -3' miRNA: 3'- gcgaugUUGUCGUgGUUGCaCGUCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 23657 | 0.67 | 0.695248 |
Target: 5'- gCGCUGCuuGACcGCACCGAgGUGCc--- -3' miRNA: 3'- -GCGAUG--UUGuCGUGGUUgCACGucug -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 12393 | 0.67 | 0.683647 |
Target: 5'- aGC-AC-GCAGCccGCCAACGUGCcccgGGGCc -3' miRNA: 3'- gCGaUGuUGUCG--UGGUUGCACG----UCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 11082 | 0.67 | 0.67199 |
Target: 5'- aCGCgggGCGGgAGCugCGGCGcgGCcuGGACa -3' miRNA: 3'- -GCGa--UGUUgUCGugGUUGCa-CG--UCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 22400 | 0.67 | 0.67199 |
Target: 5'- aGCUggccaacaACGACGcGCGCUgcuGCGUGCAcGACg -3' miRNA: 3'- gCGA--------UGUUGU-CGUGGu--UGCACGU-CUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 8914 | 0.68 | 0.656774 |
Target: 5'- aGUUGCAGaGGCGCUgguagagguaguugAGCGUGguGGCa -3' miRNA: 3'- gCGAUGUUgUCGUGG--------------UUGCACguCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 18063 | 0.68 | 0.636815 |
Target: 5'- gCGCgcggGCcACGGcCACCGGCG-GCAGGg -3' miRNA: 3'- -GCGa---UGuUGUC-GUGGUUGCaCGUCUg -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 22179 | 0.68 | 0.636815 |
Target: 5'- gGCUGCGugccCACCAugGgccgGCAGACc -3' miRNA: 3'- gCGAUGUugucGUGGUugCa---CGUCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 24218 | 0.68 | 0.622714 |
Target: 5'- gCGCUugAugAGCACCugauccauaacCGUGCucauGACu -3' miRNA: 3'- -GCGAugUugUCGUGGuu---------GCACGu---CUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 11479 | 0.69 | 0.566638 |
Target: 5'- -uCUGCAG-AGCAUCGugGUGCAGGa -3' miRNA: 3'- gcGAUGUUgUCGUGGUugCACGUCUg -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 8082 | 0.69 | 0.566638 |
Target: 5'- aCG-UAguACAGCACCAGa-UGCAGGCg -3' miRNA: 3'- -GCgAUguUGUCGUGGUUgcACGUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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