miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11891 5' -68.8 NC_003266.2 + 14736 0.66 0.138471
Target:  5'- aGCCaCCGCCUCUACCGaggucCGG-GGCGa -3'
miRNA:   3'- gCGGcGGUGGGGGUGGCc----GCCgCCGC- -5'
11891 5' -68.8 NC_003266.2 + 22992 0.66 0.137393
Target:  5'- gGCUucaGCUACCCCC-CCGuGCGGaucaccgagaaggaCGGCa -3'
miRNA:   3'- gCGG---CGGUGGGGGuGGC-CGCC--------------GCCGc -5'
11891 5' -68.8 NC_003266.2 + 30282 0.66 0.13143
Target:  5'- gCGCUccaagucuguGCCACCCUCGCUcuGGUGGCuaauGCGa -3'
miRNA:   3'- -GCGG----------CGGUGGGGGUGG--CCGCCGc---CGC- -5'
11891 5' -68.8 NC_003266.2 + 10164 0.66 0.128035
Target:  5'- cCGgCGCC-CCCgCCACCGaGCGaUGGCc -3'
miRNA:   3'- -GCgGCGGuGGG-GGUGGC-CGCcGCCGc -5'
11891 5' -68.8 NC_003266.2 + 4759 0.66 0.128035
Target:  5'- gGCCGUagauaACCCCaaugACCGGCuGCaGGUGg -3'
miRNA:   3'- gCGGCGg----UGGGGg---UGGCCGcCG-CCGC- -5'
11891 5' -68.8 NC_003266.2 + 10935 0.66 0.124722
Target:  5'- uGCC-CgGCCCCgCucaCGGCGGCcgcGGCGg -3'
miRNA:   3'- gCGGcGgUGGGG-Gug-GCCGCCG---CCGC- -5'
11891 5' -68.8 NC_003266.2 + 26706 0.66 0.124722
Target:  5'- aGCCGCUuuauACCCUgAgCGG-GGUGGUGa -3'
miRNA:   3'- gCGGCGG----UGGGGgUgGCCgCCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 8737 0.66 0.121488
Target:  5'- gGCCGgCGCgCUCCA-CGGUGGCcGCGa -3'
miRNA:   3'- gCGGCgGUG-GGGGUgGCCGCCGcCGC- -5'
11891 5' -68.8 NC_003266.2 + 17049 0.66 0.121488
Target:  5'- gCGCgGCCGCggcgguaacucuCCgCACCagGGCGGCaGCGg -3'
miRNA:   3'- -GCGgCGGUG------------GGgGUGG--CCGCCGcCGC- -5'
11891 5' -68.8 NC_003266.2 + 23417 0.66 0.121488
Target:  5'- uGCUGCUGCUUCUugUcGGCGGUGGgGg -3'
miRNA:   3'- gCGGCGGUGGGGGugG-CCGCCGCCgC- -5'
11891 5' -68.8 NC_003266.2 + 11954 0.66 0.121488
Target:  5'- aGCaacaGCCACCUCCugauccccaauGCgGGCGGCGcuGCa -3'
miRNA:   3'- gCGg---CGGUGGGGG-----------UGgCCGCCGC--CGc -5'
11891 5' -68.8 NC_003266.2 + 11139 0.67 0.11802
Target:  5'- gCGCCGCaGCUCCCGCCccgcguggaaacgGGCuGCGcGCa -3'
miRNA:   3'- -GCGGCGgUGGGGGUGG-------------CCGcCGC-CGc -5'
11891 5' -68.8 NC_003266.2 + 23402 0.67 0.115252
Target:  5'- cCGCCGcCCAgCCCCGCCaccuuuGUcGCGGCc -3'
miRNA:   3'- -GCGGC-GGUgGGGGUGGc-----CGcCGCCGc -5'
11891 5' -68.8 NC_003266.2 + 25788 0.67 0.109317
Target:  5'- -cCUGCCGCUCCUucuuACCGGUcugGGUGGUGg -3'
miRNA:   3'- gcGGCGGUGGGGG----UGGCCG---CCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 11769 0.67 0.106457
Target:  5'- gCGCCGCCugCuggcgCUUACCGcGCGGCGcauccugucguuGCGg -3'
miRNA:   3'- -GCGGCGGugG-----GGGUGGC-CGCCGC------------CGC- -5'
11891 5' -68.8 NC_003266.2 + 14959 0.67 0.106457
Target:  5'- aCGCUGCuCACCCCucggacguCACCuGCGGCGuggaGCa -3'
miRNA:   3'- -GCGGCG-GUGGGG--------GUGGcCGCCGC----CGc -5'
11891 5' -68.8 NC_003266.2 + 25596 0.67 0.100948
Target:  5'- aGCCGCCGCCgCCagACCGuCGuccuCGGCGg -3'
miRNA:   3'- gCGGCGGUGGgGG--UGGCcGCc---GCCGC- -5'
11891 5' -68.8 NC_003266.2 + 14840 0.67 0.100948
Target:  5'- aGCCuugGCCGCCgCCACU-GCuGCGGCGc -3'
miRNA:   3'- gCGG---CGGUGGgGGUGGcCGcCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 13641 0.68 0.098034
Target:  5'- cCGCUGCCugUCgugCCAgCGGCguuuacgGGCGGCa -3'
miRNA:   3'- -GCGGCGGugGG---GGUgGCCG-------CCGCCGc -5'
11891 5' -68.8 NC_003266.2 + 10123 0.68 0.095709
Target:  5'- cCGCCGCCGCacuuCCUCAUCGGCuaccaguaccuGGUGcGCa -3'
miRNA:   3'- -GCGGCGGUG----GGGGUGGCCG-----------CCGC-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.