miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11905 5' -58.2 NC_003266.2 + 11844 0.66 0.469675
Target:  5'- gCCGCCgGGUCuuGGaa-GCCGCgGCg -3'
miRNA:   3'- gGGCGGaCUAGggCUgugUGGUGgUG- -5'
11905 5' -58.2 NC_003266.2 + 11837 0.66 0.469675
Target:  5'- uCCC-CCUcGGUCCCGGCcccggucaggGC-CCGCUGCa -3'
miRNA:   3'- -GGGcGGA-CUAGGGCUG----------UGuGGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 33350 0.66 0.459619
Target:  5'- aCUGCUgcgGggCCUGAUGCGCCacaACCGCc -3'
miRNA:   3'- gGGCGGa--CuaGGGCUGUGUGG---UGGUG- -5'
11905 5' -58.2 NC_003266.2 + 16183 0.66 0.427278
Target:  5'- aCCCGCUUGAUUuuGcggggauuucuuucAUccuuCACCGCCGCc -3'
miRNA:   3'- -GGGCGGACUAGggC--------------UGu---GUGGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 18088 0.67 0.401843
Target:  5'- uUCGCCUGAgggcgagccCCCGGuCGCGCgCggGCCACg -3'
miRNA:   3'- gGGCGGACUa--------GGGCU-GUGUG-G--UGGUG- -5'
11905 5' -58.2 NC_003266.2 + 16999 0.67 0.395408
Target:  5'- aCCGCCgcggccgcgcgccucUGA-CCCugccgcgGGCGCGCUACCACc -3'
miRNA:   3'- gGGCGG---------------ACUaGGG-------CUGUGUGGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 34157 0.67 0.39267
Target:  5'- ---aCCUGGUCCgGGCACuGCaCACCGCu -3'
miRNA:   3'- gggcGGACUAGGgCUGUG-UG-GUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 12968 0.67 0.39267
Target:  5'- cCCCaGCCcGcgCUCGACAUgACCGCgCGCa -3'
miRNA:   3'- -GGG-CGGaCuaGGGCUGUG-UGGUG-GUG- -5'
11905 5' -58.2 NC_003266.2 + 15211 0.67 0.383635
Target:  5'- gCCCGCCcGcgCCC-AC-CAUUACCACc -3'
miRNA:   3'- -GGGCGGaCuaGGGcUGuGUGGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 8298 0.67 0.383635
Target:  5'- uCCCGCgcgcccUUGAaaaacUCCUGcaagucaaccGCGCGCCGCCGCu -3'
miRNA:   3'- -GGGCG------GACU-----AGGGC----------UGUGUGGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 9307 0.68 0.365982
Target:  5'- aCCGUCUG--CCCG-UGCGCCGCCGg -3'
miRNA:   3'- gGGCGGACuaGGGCuGUGUGGUGGUg -5'
11905 5' -58.2 NC_003266.2 + 23221 0.68 0.365114
Target:  5'- cUCCGCCUcugCCCcugaagaGACAUACCuACCGCc -3'
miRNA:   3'- -GGGCGGAcuaGGG-------CUGUGUGG-UGGUG- -5'
11905 5' -58.2 NC_003266.2 + 9692 0.68 0.348897
Target:  5'- cCCCagGCgUGGUCCUGACACcUgGCCAg -3'
miRNA:   3'- -GGG--CGgACUAGGGCUGUGuGgUGGUg -5'
11905 5' -58.2 NC_003266.2 + 15770 0.68 0.348897
Target:  5'- gCCGCCgGG---CGAUGCGCCGCCGCc -3'
miRNA:   3'- gGGCGGaCUaggGCUGUGUGGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 8895 0.68 0.340571
Target:  5'- gCCCGC--GAUCCCGAgGgCGCCgugguuuacaGCCGCg -3'
miRNA:   3'- -GGGCGgaCUAGGGCUgU-GUGG----------UGGUG- -5'
11905 5' -58.2 NC_003266.2 + 13890 0.68 0.332389
Target:  5'- cCCCGCUgGAggcUCCUuACGUGCCACCGCg -3'
miRNA:   3'- -GGGCGGaCU---AGGGcUGUGUGGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 16572 0.68 0.332389
Target:  5'- cCUCGCgCUucaagcCCCGACGCGgCGCCGCg -3'
miRNA:   3'- -GGGCG-GAcua---GGGCUGUGUgGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 11446 0.68 0.324353
Target:  5'- uCUCGUU--GUCCCGACugugcuGCACCACCAg -3'
miRNA:   3'- -GGGCGGacUAGGGCUG------UGUGGUGGUg -5'
11905 5' -58.2 NC_003266.2 + 17070 0.69 0.316462
Target:  5'- gCCCGCggcagGGUCagaGGCGCGCgGCCGCg -3'
miRNA:   3'- -GGGCGga---CUAGgg-CUGUGUGgUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 12644 0.69 0.308716
Target:  5'- cCCCGaCCgGAgCCUG-CACGCC-CCACa -3'
miRNA:   3'- -GGGC-GGaCUaGGGCuGUGUGGuGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.