miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11924 5' -60 NC_003278.1 + 19315 0.66 0.435332
Target:  5'- cGCGUCGCUgccuugcauGAUGCGACgcaaGggcgCGGUGGc -3'
miRNA:   3'- cCGUAGCGG---------CUGCGCUGg---Ca---GCCGCC- -5'
11924 5' -60 NC_003278.1 + 22879 0.68 0.323562
Target:  5'- cGGCAggcccgccagCGCCGGCGCGAgCacCGGCu- -3'
miRNA:   3'- -CCGUa---------GCGGCUGCGCUgGcaGCCGcc -5'
11924 5' -60 NC_003278.1 + 30560 0.68 0.313635
Target:  5'- aGgGUUGCCG-CGuCGGCCaccuucuggcggugGUCGGCGGc -3'
miRNA:   3'- cCgUAGCGGCuGC-GCUGG--------------CAGCCGCC- -5'
11924 5' -60 NC_003278.1 + 13186 1.11 0.000196
Target:  5'- aGGCAUCGCCGACGCGACCGUCGGCGGc -3'
miRNA:   3'- -CCGUAGCGGCUGCGCUGGCAGCCGCC- -5'
11924 5' -60 NC_003278.1 + 12187 0.66 0.406685
Target:  5'- cGcCGUCGCUGAUgaguucgGUGguACCGcCGGCGGg -3'
miRNA:   3'- cC-GUAGCGGCUG-------CGC--UGGCaGCCGCC- -5'
11924 5' -60 NC_003278.1 + 6829 0.66 0.398593
Target:  5'- uGGCAUgGCCGGCGgcgagguaGAgCuUCGcGCGGg -3'
miRNA:   3'- -CCGUAgCGGCUGCg-------CUgGcAGC-CGCC- -5'
11924 5' -60 NC_003278.1 + 7154 0.67 0.384463
Target:  5'- aGGgAUCGCUguuGAUGUgcccggcugggaccgGGCCGUUGGCGa -3'
miRNA:   3'- -CCgUAGCGG---CUGCG---------------CUGGCAGCCGCc -5'
11924 5' -60 NC_003278.1 + 33276 0.67 0.380116
Target:  5'- ----aCGCCGGCGauggccuCGGCCGcagcCGGCGGa -3'
miRNA:   3'- ccguaGCGGCUGC-------GCUGGCa---GCCGCC- -5'
11924 5' -60 NC_003278.1 + 4494 0.67 0.372375
Target:  5'- aGUcgCGCuCGAuguUGCGGCCGUCcGUGGu -3'
miRNA:   3'- cCGuaGCG-GCU---GCGCUGGCAGcCGCC- -5'
11924 5' -60 NC_003278.1 + 13463 0.68 0.331356
Target:  5'- aGGCGUcgaCGCUGAUGgacguaGGCCGUCaaGCGGg -3'
miRNA:   3'- -CCGUA---GCGGCUGCg-----CUGGCAGc-CGCC- -5'
11924 5' -60 NC_003278.1 + 8874 0.67 0.35556
Target:  5'- cGGCAg-GUCGAgGCGAgcuCCGgCGGCGa -3'
miRNA:   3'- -CCGUagCGGCUgCGCU---GGCaGCCGCc -5'
11924 5' -60 NC_003278.1 + 12076 0.67 0.372375
Target:  5'- gGGCGUCGCgGu--CG-CCGUUgGGCGGg -3'
miRNA:   3'- -CCGUAGCGgCugcGCuGGCAG-CCGCC- -5'
11924 5' -60 NC_003278.1 + 7941 0.66 0.425963
Target:  5'- uGCcgUuCCGGgGCGGCCGUCGGaaugucCGGc -3'
miRNA:   3'- cCGuaGcGGCUgCGCUGGCAGCC------GCC- -5'
11924 5' -60 NC_003278.1 + 26828 0.67 0.35556
Target:  5'- gGGCAUCuGCaCGAacaUGCcGCCGUauaGGUGGg -3'
miRNA:   3'- -CCGUAG-CG-GCU---GCGcUGGCAg--CCGCC- -5'
11924 5' -60 NC_003278.1 + 28284 0.66 0.416715
Target:  5'- gGGCAUgGgCCagguACGCccgGGCCGaggCGGCGGg -3'
miRNA:   3'- -CCGUAgC-GGc---UGCG---CUGGCa--GCCGCC- -5'
11924 5' -60 NC_003278.1 + 5564 0.67 0.372375
Target:  5'- cGCugGUUGUCGAgCGCGGacaCGUCGcGCGGc -3'
miRNA:   3'- cCG--UAGCGGCU-GCGCUg--GCAGC-CGCC- -5'
11924 5' -60 NC_003278.1 + 21669 0.67 0.339288
Target:  5'- aGCAUgGCCaGCaGCGGCuggucgaaCGUCGGUGGc -3'
miRNA:   3'- cCGUAgCGGcUG-CGCUG--------GCAGCCGCC- -5'
11924 5' -60 NC_003278.1 + 28176 0.68 0.315905
Target:  5'- aGGUGUCGCCGcacuugcCGCGcCCG-CaGCGGa -3'
miRNA:   3'- -CCGUAGCGGCu------GCGCuGGCaGcCGCC- -5'
11924 5' -60 NC_003278.1 + 22281 0.66 0.407591
Target:  5'- ----cCGCCG-CGgGguGCCGUCGGCGa -3'
miRNA:   3'- ccguaGCGGCuGCgC--UGGCAGCCGCc -5'
11924 5' -60 NC_003278.1 + 17076 0.66 0.389723
Target:  5'- aGGCcgaugAUCGCgGugGCGAUgGUgcgaauggGGCGGg -3'
miRNA:   3'- -CCG-----UAGCGgCugCGCUGgCAg-------CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.