miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11925 3' -56.3 NC_003278.1 + 27002 0.66 0.499043
Target:  5'- gGCAUg-UCGUGCggCCAGGUGUUGGCGg -3'
miRNA:   3'- -UGUGaaGGUACG--GGUCCGCAGCUGCg -5'
11925 3' -56.3 NC_003278.1 + 4117 0.66 0.531319
Target:  5'- --cCUUCUc-GCCCAGGUGgUCGGCGa -3'
miRNA:   3'- uguGAAGGuaCGGGUCCGC-AGCUGCg -5'
11925 3' -56.3 NC_003278.1 + 28234 0.66 0.542249
Target:  5'- uAC-CUggcCCAUGCCCGcGGCuUCGACcugGCg -3'
miRNA:   3'- -UGuGAa--GGUACGGGU-CCGcAGCUG---CG- -5'
11925 3' -56.3 NC_003278.1 + 1408 0.66 0.542249
Target:  5'- gACGCUgauuaCAaGCCUGGaGCGUCGaacuGCGCg -3'
miRNA:   3'- -UGUGAag---GUaCGGGUC-CGCAGC----UGCG- -5'
11925 3' -56.3 NC_003278.1 + 21347 0.66 0.553252
Target:  5'- aGCGCg-CC--GUCCAGcGCGUCGGCGg -3'
miRNA:   3'- -UGUGaaGGuaCGGGUC-CGCAGCUGCg -5'
11925 3' -56.3 NC_003278.1 + 30311 0.66 0.531319
Target:  5'- gGCACcaCCAgGCgCAGcGCGUCGAC-Ca -3'
miRNA:   3'- -UGUGaaGGUaCGgGUC-CGCAGCUGcG- -5'
11925 3' -56.3 NC_003278.1 + 22951 0.66 0.52047
Target:  5'- cGCAUcgaagUCCucGCCCAGGCGUgucagcagguUGGCGUc -3'
miRNA:   3'- -UGUGa----AGGuaCGGGUCCGCA----------GCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 21304 0.66 0.52047
Target:  5'- gGCAggUCgAUGCCCAGGUagcccagGACGCc -3'
miRNA:   3'- -UGUgaAGgUACGGGUCCGcag----CUGCG- -5'
11925 3' -56.3 NC_003278.1 + 21727 0.66 0.509709
Target:  5'- gGCGCUggcgCCGaGCaCCAgggcaccgauGGCGcCGGCGCu -3'
miRNA:   3'- -UGUGAa---GGUaCG-GGU----------CCGCaGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 14069 0.66 0.499043
Target:  5'- uGCGCaggUCCAggcgGgUCAGGUGUCGGCu- -3'
miRNA:   3'- -UGUGa--AGGUa---CgGGUCCGCAGCUGcg -5'
11925 3' -56.3 NC_003278.1 + 13106 0.67 0.482188
Target:  5'- uACAuCUUCCAcGCCCGcgccgccgacggucGCGUCGGCGa -3'
miRNA:   3'- -UGU-GAAGGUaCGGGUc-------------CGCAGCUGCg -5'
11925 3' -56.3 NC_003278.1 + 3752 0.67 0.488477
Target:  5'- cCACgUUCUAcuucGCCCgcgAGGCGcugaUCGACGCg -3'
miRNA:   3'- uGUG-AAGGUa---CGGG---UCCGC----AGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 22711 0.67 0.478017
Target:  5'- cGCGCcgCUGUGCUCGGuuuCGUCGACGg -3'
miRNA:   3'- -UGUGaaGGUACGGGUCc--GCAGCUGCg -5'
11925 3' -56.3 NC_003278.1 + 23263 0.67 0.446322
Target:  5'- gGCGCUgCCAcGCUgUAGGCGguuccacUCGGCGCg -3'
miRNA:   3'- -UGUGAaGGUaCGG-GUCCGC-------AGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 32280 0.68 0.398726
Target:  5'- cCGCaugCCGcUGCCC-GGCGauaUCGACGCc -3'
miRNA:   3'- uGUGaa-GGU-ACGGGuCCGC---AGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 6624 0.68 0.427485
Target:  5'- aGCACguagucggCgAUGUCCAgGGCGcCGGCGUa -3'
miRNA:   3'- -UGUGaa------GgUACGGGU-CCGCaGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 28433 0.68 0.437341
Target:  5'- cGCGCggcgUCUggugGUGCCCAcccaGCGUCGACcuGCa -3'
miRNA:   3'- -UGUGa---AGG----UACGGGUc---CGCAGCUG--CG- -5'
11925 3' -56.3 NC_003278.1 + 2848 0.68 0.398726
Target:  5'- gACACcaCCGgcauggGCUCuGGCGUCG-CGCa -3'
miRNA:   3'- -UGUGaaGGUa-----CGGGuCCGCAGCuGCG- -5'
11925 3' -56.3 NC_003278.1 + 21449 0.68 0.389418
Target:  5'- cCAUggCCGgccugGCCCAgGGCcUCGGCGCc -3'
miRNA:   3'- uGUGaaGGUa----CGGGU-CCGcAGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 1762 0.69 0.362364
Target:  5'- -aGCg-CCGUGCgCAGcGCGUCGAUGUc -3'
miRNA:   3'- ugUGaaGGUACGgGUC-CGCAGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.