Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 31606 | 0.76 | 0.127249 |
Target: 5'- cCACUUCCAcuucugcugcgGCCUGGGCGgCGGCGCc -3' miRNA: 3'- uGUGAAGGUa----------CGGGUCCGCaGCUGCG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 21347 | 0.66 | 0.553252 |
Target: 5'- aGCGCg-CC--GUCCAGcGCGUCGGCGg -3' miRNA: 3'- -UGUGaaGGuaCGGGUC-CGCAGCUGCg -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 1408 | 0.66 | 0.542249 |
Target: 5'- gACGCUgauuaCAaGCCUGGaGCGUCGaacuGCGCg -3' miRNA: 3'- -UGUGAag---GUaCGGGUC-CGCAGC----UGCG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 28234 | 0.66 | 0.542249 |
Target: 5'- uAC-CUggcCCAUGCCCGcGGCuUCGACcugGCg -3' miRNA: 3'- -UGuGAa--GGUACGGGU-CCGcAGCUG---CG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 4117 | 0.66 | 0.531319 |
Target: 5'- --cCUUCUc-GCCCAGGUGgUCGGCGa -3' miRNA: 3'- uguGAAGGuaCGGGUCCGC-AGCUGCg -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 13106 | 0.67 | 0.482188 |
Target: 5'- uACAuCUUCCAcGCCCGcgccgccgacggucGCGUCGGCGa -3' miRNA: 3'- -UGU-GAAGGUaCGGGUc-------------CGCAGCUGCg -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 28433 | 0.68 | 0.437341 |
Target: 5'- cGCGCggcgUCUggugGUGCCCAcccaGCGUCGACcuGCa -3' miRNA: 3'- -UGUGa---AGG----UACGGGUc---CGCAGCUG--CG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 32280 | 0.68 | 0.398726 |
Target: 5'- cCGCaugCCGcUGCCC-GGCGauaUCGACGCc -3' miRNA: 3'- uGUGaa-GGU-ACGGGuCCGC---AGCUGCG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 21449 | 0.68 | 0.389418 |
Target: 5'- cCAUggCCGgccugGCCCAgGGCcUCGGCGCc -3' miRNA: 3'- uGUGaaGGUa----CGGGU-CCGcAGCUGCG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 6520 | 0.69 | 0.380254 |
Target: 5'- cCACcgUCAUGCUCuGGCGcaUCGAUGCc -3' miRNA: 3'- uGUGaaGGUACGGGuCCGC--AGCUGCG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 2788 | 0.76 | 0.127249 |
Target: 5'- gACGCcagagcCCAUGCCgGuGGUGUCGACGCc -3' miRNA: 3'- -UGUGaa----GGUACGGgU-CCGCAGCUGCG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 21658 | 0.74 | 0.168847 |
Target: 5'- gGCGCcaUCgGUGCCCuGGUGcUCGGCGCc -3' miRNA: 3'- -UGUGa-AGgUACGGGuCCGC-AGCUGCG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 29190 | 0.71 | 0.281911 |
Target: 5'- aACAcCUUCaccaGUGCCCAGGuCG-CGGCGg -3' miRNA: 3'- -UGU-GAAGg---UACGGGUCC-GCaGCUGCg -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 5892 | 0.7 | 0.32025 |
Target: 5'- gGCACcgCCGUGaCCCGGGCcUgGugGUg -3' miRNA: 3'- -UGUGaaGGUAC-GGGUCCGcAgCugCG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 8035 | 0.69 | 0.336643 |
Target: 5'- uGCugUUCgGUGCCCu-GC-UCGGCGCc -3' miRNA: 3'- -UGugAAGgUACGGGucCGcAGCUGCG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 1762 | 0.69 | 0.362364 |
Target: 5'- -aGCg-CCGUGCgCAGcGCGUCGAUGUc -3' miRNA: 3'- ugUGaaGGUACGgGUC-CGCAGCUGCG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 13478 | 1.11 | 0.000314 |
Target: 5'- gACACUUCCAUGCCCAGGCGUCGACGCu -3' miRNA: 3'- -UGUGAAGGUACGGGUCCGCAGCUGCG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 22951 | 0.66 | 0.52047 |
Target: 5'- cGCAUcgaagUCCucGCCCAGGCGUgucagcagguUGGCGUc -3' miRNA: 3'- -UGUGa----AGGuaCGGGUCCGCA----------GCUGCG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 21304 | 0.66 | 0.52047 |
Target: 5'- gGCAggUCgAUGCCCAGGUagcccagGACGCc -3' miRNA: 3'- -UGUgaAGgUACGGGUCCGcag----CUGCG- -5' |
|||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 21727 | 0.66 | 0.509709 |
Target: 5'- gGCGCUggcgCCGaGCaCCAgggcaccgauGGCGcCGGCGCu -3' miRNA: 3'- -UGUGAa---GGUaCG-GGU----------CCGCaGCUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home