miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11925 3' -56.3 NC_003278.1 + 27002 0.66 0.499043
Target:  5'- gGCAUg-UCGUGCggCCAGGUGUUGGCGg -3'
miRNA:   3'- -UGUGaaGGUACG--GGUCCGCAGCUGCg -5'
11925 3' -56.3 NC_003278.1 + 5633 0.71 0.289277
Target:  5'- -aACUUg---GCCCAGGCGUCGA-GCa -3'
miRNA:   3'- ugUGAAgguaCGGGUCCGCAGCUgCG- -5'
11925 3' -56.3 NC_003278.1 + 26689 0.76 0.13094
Target:  5'- -aACUUCUucaggucgagGCCCAGGCGggcggCGGCGCa -3'
miRNA:   3'- ugUGAAGGua--------CGGGUCCGCa----GCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 13478 1.11 0.000314
Target:  5'- gACACUUCCAUGCCCAGGCGUCGACGCu -3'
miRNA:   3'- -UGUGAAGGUACGGGUCCGCAGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 6624 0.68 0.427485
Target:  5'- aGCACguagucggCgAUGUCCAgGGCGcCGGCGUa -3'
miRNA:   3'- -UGUGaa------GgUACGGGU-CCGCaGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 30311 0.66 0.531319
Target:  5'- gGCACcaCCAgGCgCAGcGCGUCGAC-Ca -3'
miRNA:   3'- -UGUGaaGGUaCGgGUC-CGCAGCUGcG- -5'
11925 3' -56.3 NC_003278.1 + 22951 0.66 0.52047
Target:  5'- cGCAUcgaagUCCucGCCCAGGCGUgucagcagguUGGCGUc -3'
miRNA:   3'- -UGUGa----AGGuaCGGGUCCGCA----------GCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 21304 0.66 0.52047
Target:  5'- gGCAggUCgAUGCCCAGGUagcccagGACGCc -3'
miRNA:   3'- -UGUgaAGgUACGGGUCCGcag----CUGCG- -5'
11925 3' -56.3 NC_003278.1 + 21727 0.66 0.509709
Target:  5'- gGCGCUggcgCCGaGCaCCAgggcaccgauGGCGcCGGCGCu -3'
miRNA:   3'- -UGUGAa---GGUaCG-GGU----------CCGCaGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 26483 0.7 0.328371
Target:  5'- gGCACUUCUuuUGCCCGuugagaacGGCGUaGACGg -3'
miRNA:   3'- -UGUGAAGGu-ACGGGU--------CCGCAgCUGCg -5'
11925 3' -56.3 NC_003278.1 + 28193 0.69 0.362364
Target:  5'- -gAUUUCCuugAUGUgCCAGGUGUCGcCGCa -3'
miRNA:   3'- ugUGAAGG---UACG-GGUCCGCAGCuGCG- -5'
11925 3' -56.3 NC_003278.1 + 18001 0.69 0.362364
Target:  5'- -----aCCAgGCCUGGGCGUCGAUGa -3'
miRNA:   3'- ugugaaGGUaCGGGUCCGCAGCUGCg -5'
11925 3' -56.3 NC_003278.1 + 3752 0.67 0.488477
Target:  5'- cCACgUUCUAcuucGCCCgcgAGGCGcugaUCGACGCg -3'
miRNA:   3'- uGUG-AAGGUa---CGGG---UCCGC----AGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 30187 0.69 0.345067
Target:  5'- aGCAC-UCCA-GCaCgCGGGCcUCGGCGCg -3'
miRNA:   3'- -UGUGaAGGUaCG-G-GUCCGcAGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 22711 0.67 0.478017
Target:  5'- cGCGCcgCUGUGCUCGGuuuCGUCGACGg -3'
miRNA:   3'- -UGUGaaGGUACGGGUCc--GCAGCUGCg -5'
11925 3' -56.3 NC_003278.1 + 29221 0.69 0.362364
Target:  5'- cACGCUcUCGUcGUCgGGGCGaUCGAUGCg -3'
miRNA:   3'- -UGUGAaGGUA-CGGgUCCGC-AGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 8685 0.7 0.328371
Target:  5'- -gGCg-CCG-GCCCAGGUguucaGUCGACGCu -3'
miRNA:   3'- ugUGaaGGUaCGGGUCCG-----CAGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 18167 0.72 0.240818
Target:  5'- aGCGCUgg---GCgUCAGGCGUUGACGCg -3'
miRNA:   3'- -UGUGAagguaCG-GGUCCGCAGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 23263 0.67 0.446322
Target:  5'- gGCGCUgCCAcGCUgUAGGCGguuccacUCGGCGCg -3'
miRNA:   3'- -UGUGAaGGUaCGG-GUCCGC-------AGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 2848 0.68 0.398726
Target:  5'- gACACcaCCGgcauggGCUCuGGCGUCG-CGCa -3'
miRNA:   3'- -UGUGaaGGUa-----CGGGuCCGCAGCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.