Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11925 | 3' | -56.3 | NC_003278.1 | + | 1408 | 0.66 | 0.542249 |
Target: 5'- gACGCUgauuaCAaGCCUGGaGCGUCGaacuGCGCg -3' miRNA: 3'- -UGUGAag---GUaCGGGUC-CGCAGC----UGCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 1762 | 0.69 | 0.362364 |
Target: 5'- -aGCg-CCGUGCgCAGcGCGUCGAUGUc -3' miRNA: 3'- ugUGaaGGUACGgGUC-CGCAGCUGCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 2788 | 0.76 | 0.127249 |
Target: 5'- gACGCcagagcCCAUGCCgGuGGUGUCGACGCc -3' miRNA: 3'- -UGUGaa----GGUACGGgU-CCGCAGCUGCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 2848 | 0.68 | 0.398726 |
Target: 5'- gACACcaCCGgcauggGCUCuGGCGUCG-CGCa -3' miRNA: 3'- -UGUGaaGGUa-----CGGGuCCGCAGCuGCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 3752 | 0.67 | 0.488477 |
Target: 5'- cCACgUUCUAcuucGCCCgcgAGGCGcugaUCGACGCg -3' miRNA: 3'- uGUG-AAGGUa---CGGG---UCCGC----AGCUGCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 4117 | 0.66 | 0.531319 |
Target: 5'- --cCUUCUc-GCCCAGGUGgUCGGCGa -3' miRNA: 3'- uguGAAGGuaCGGGUCCGC-AGCUGCg -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 5633 | 0.71 | 0.289277 |
Target: 5'- -aACUUg---GCCCAGGCGUCGA-GCa -3' miRNA: 3'- ugUGAAgguaCGGGUCCGCAGCUgCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 5892 | 0.7 | 0.32025 |
Target: 5'- gGCACcgCCGUGaCCCGGGCcUgGugGUg -3' miRNA: 3'- -UGUGaaGGUAC-GGGUCCGcAgCugCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 6385 | 0.78 | 0.095312 |
Target: 5'- cGCGcCUUCCAUGCCCuGGUG-CGGgGCa -3' miRNA: 3'- -UGU-GAAGGUACGGGuCCGCaGCUgCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 6520 | 0.69 | 0.380254 |
Target: 5'- cCACcgUCAUGCUCuGGCGcaUCGAUGCc -3' miRNA: 3'- uGUGaaGGUACGGGuCCGC--AGCUGCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 6624 | 0.68 | 0.427485 |
Target: 5'- aGCACguagucggCgAUGUCCAgGGCGcCGGCGUa -3' miRNA: 3'- -UGUGaa------GgUACGGGU-CCGCaGCUGCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 8035 | 0.69 | 0.336643 |
Target: 5'- uGCugUUCgGUGCCCu-GC-UCGGCGCc -3' miRNA: 3'- -UGugAAGgUACGGGucCGcAGCUGCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 8685 | 0.7 | 0.328371 |
Target: 5'- -gGCg-CCG-GCCCAGGUguucaGUCGACGCu -3' miRNA: 3'- ugUGaaGGUaCGGGUCCG-----CAGCUGCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 13106 | 0.67 | 0.482188 |
Target: 5'- uACAuCUUCCAcGCCCGcgccgccgacggucGCGUCGGCGa -3' miRNA: 3'- -UGU-GAAGGUaCGGGUc-------------CGCAGCUGCg -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 13478 | 1.11 | 0.000314 |
Target: 5'- gACACUUCCAUGCCCAGGCGUCGACGCu -3' miRNA: 3'- -UGUGAAGGUACGGGUCCGCAGCUGCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 14069 | 0.66 | 0.499043 |
Target: 5'- uGCGCaggUCCAggcgGgUCAGGUGUCGGCu- -3' miRNA: 3'- -UGUGa--AGGUa---CgGGUCCGCAGCUGcg -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 18001 | 0.69 | 0.362364 |
Target: 5'- -----aCCAgGCCUGGGCGUCGAUGa -3' miRNA: 3'- ugugaaGGUaCGGGUCCGCAGCUGCg -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 18167 | 0.72 | 0.240818 |
Target: 5'- aGCGCUgg---GCgUCAGGCGUUGACGCg -3' miRNA: 3'- -UGUGAagguaCG-GGUCCGCAGCUGCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 21304 | 0.66 | 0.52047 |
Target: 5'- gGCAggUCgAUGCCCAGGUagcccagGACGCc -3' miRNA: 3'- -UGUgaAGgUACGGGUCCGcag----CUGCG- -5' |
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11925 | 3' | -56.3 | NC_003278.1 | + | 21347 | 0.66 | 0.553252 |
Target: 5'- aGCGCg-CC--GUCCAGcGCGUCGGCGg -3' miRNA: 3'- -UGUGaaGGuaCGGGUC-CGCAGCUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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