miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11925 3' -56.3 NC_003278.1 + 13478 1.11 0.000314
Target:  5'- gACACUUCCAUGCCCAGGCGUCGACGCu -3'
miRNA:   3'- -UGUGAAGGUACGGGUCCGCAGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 6385 0.78 0.095312
Target:  5'- cGCGcCUUCCAUGCCCuGGUG-CGGgGCa -3'
miRNA:   3'- -UGU-GAAGGUACGGGuCCGCaGCUgCG- -5'
11925 3' -56.3 NC_003278.1 + 31606 0.76 0.127249
Target:  5'- cCACUUCCAcuucugcugcgGCCUGGGCGgCGGCGCc -3'
miRNA:   3'- uGUGAAGGUa----------CGGGUCCGCaGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 2788 0.76 0.127249
Target:  5'- gACGCcagagcCCAUGCCgGuGGUGUCGACGCc -3'
miRNA:   3'- -UGUGaa----GGUACGGgU-CCGCAGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 26689 0.76 0.13094
Target:  5'- -aACUUCUucaggucgagGCCCAGGCGggcggCGGCGCa -3'
miRNA:   3'- ugUGAAGGua--------CGGGUCCGCa----GCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 21658 0.74 0.168847
Target:  5'- gGCGCcaUCgGUGCCCuGGUGcUCGGCGCc -3'
miRNA:   3'- -UGUGa-AGgUACGGGuCCGC-AGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 18167 0.72 0.240818
Target:  5'- aGCGCUgg---GCgUCAGGCGUUGACGCg -3'
miRNA:   3'- -UGUGAagguaCG-GGUCCGCAGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 29190 0.71 0.281911
Target:  5'- aACAcCUUCaccaGUGCCCAGGuCG-CGGCGg -3'
miRNA:   3'- -UGU-GAAGg---UACGGGUCC-GCaGCUGCg -5'
11925 3' -56.3 NC_003278.1 + 5633 0.71 0.289277
Target:  5'- -aACUUg---GCCCAGGCGUCGA-GCa -3'
miRNA:   3'- ugUGAAgguaCGGGUCCGCAGCUgCG- -5'
11925 3' -56.3 NC_003278.1 + 5892 0.7 0.32025
Target:  5'- gGCACcgCCGUGaCCCGGGCcUgGugGUg -3'
miRNA:   3'- -UGUGaaGGUAC-GGGUCCGcAgCugCG- -5'
11925 3' -56.3 NC_003278.1 + 8685 0.7 0.328371
Target:  5'- -gGCg-CCG-GCCCAGGUguucaGUCGACGCu -3'
miRNA:   3'- ugUGaaGGUaCGGGUCCG-----CAGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 26483 0.7 0.328371
Target:  5'- gGCACUUCUuuUGCCCGuugagaacGGCGUaGACGg -3'
miRNA:   3'- -UGUGAAGGu-ACGGGU--------CCGCAgCUGCg -5'
11925 3' -56.3 NC_003278.1 + 8035 0.69 0.336643
Target:  5'- uGCugUUCgGUGCCCu-GC-UCGGCGCc -3'
miRNA:   3'- -UGugAAGgUACGGGucCGcAGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 30187 0.69 0.345067
Target:  5'- aGCAC-UCCA-GCaCgCGGGCcUCGGCGCg -3'
miRNA:   3'- -UGUGaAGGUaCG-G-GUCCGcAGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 28193 0.69 0.362364
Target:  5'- -gAUUUCCuugAUGUgCCAGGUGUCGcCGCa -3'
miRNA:   3'- ugUGAAGG---UACG-GGUCCGCAGCuGCG- -5'
11925 3' -56.3 NC_003278.1 + 1762 0.69 0.362364
Target:  5'- -aGCg-CCGUGCgCAGcGCGUCGAUGUc -3'
miRNA:   3'- ugUGaaGGUACGgGUC-CGCAGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 29221 0.69 0.362364
Target:  5'- cACGCUcUCGUcGUCgGGGCGaUCGAUGCg -3'
miRNA:   3'- -UGUGAaGGUA-CGGgUCCGC-AGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 18001 0.69 0.362364
Target:  5'- -----aCCAgGCCUGGGCGUCGAUGa -3'
miRNA:   3'- ugugaaGGUaCGGGUCCGCAGCUGCg -5'
11925 3' -56.3 NC_003278.1 + 6520 0.69 0.380254
Target:  5'- cCACcgUCAUGCUCuGGCGcaUCGAUGCc -3'
miRNA:   3'- uGUGaaGGUACGGGuCCGC--AGCUGCG- -5'
11925 3' -56.3 NC_003278.1 + 21449 0.68 0.389418
Target:  5'- cCAUggCCGgccugGCCCAgGGCcUCGGCGCc -3'
miRNA:   3'- uGUGaaGGUa----CGGGU-CCGcAGCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.