miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11933 5' -62.6 NC_003278.1 + 33892 0.69 0.159139
Target:  5'- cGaCCUCG-CUggGGugacaGCCAGGCCGACa -3'
miRNA:   3'- aCgGGAGCuGGuaCC-----CGGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 31801 0.67 0.219228
Target:  5'- gUGCCCgggacacCGGCCA-GGcGCUcgaagucgcggAGGCCGGCc -3'
miRNA:   3'- -ACGGGa------GCUGGUaCC-CGG-----------UCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 31219 0.68 0.172601
Target:  5'- aGUCCUCGcACCAgagggcgcugGGcGCCAGGCgGGu -3'
miRNA:   3'- aCGGGAGC-UGGUa---------CC-CGGUCCGgCUg -5'
11933 5' -62.6 NC_003278.1 + 31185 0.67 0.202596
Target:  5'- nGUgUUUGuCCGcUGGGCCAGGgCGGCc -3'
miRNA:   3'- aCGgGAGCuGGU-ACCCGGUCCgGCUG- -5'
11933 5' -62.6 NC_003278.1 + 28290 0.7 0.117552
Target:  5'- aGCCg-CGGgCAUGGGCCagguacgcccGGGCCGAg -3'
miRNA:   3'- aCGGgaGCUgGUACCCGG----------UCCGGCUg -5'
11933 5' -62.6 NC_003278.1 + 28066 0.71 0.096608
Target:  5'- gUGCCCUUGAUC--GGcGUCAGGCCGuACu -3'
miRNA:   3'- -ACGGGAGCUGGuaCC-CGGUCCGGC-UG- -5'
11933 5' -62.6 NC_003278.1 + 27856 0.68 0.187069
Target:  5'- aGCaCUCGGCCAUGgcGGCUucguacuGGCUGACc -3'
miRNA:   3'- aCGgGAGCUGGUAC--CCGGu------CCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 27518 0.66 0.255991
Target:  5'- gGCa-UCGACUG-GGGCCAGGgaGACg -3'
miRNA:   3'- aCGggAGCUGGUaCCCGGUCCggCUG- -5'
11933 5' -62.6 NC_003278.1 + 23240 0.7 0.11432
Target:  5'- cGCgCUCG-CCAgGGGCC-GGCCGGa -3'
miRNA:   3'- aCGgGAGCuGGUaCCCGGuCCGGCUg -5'
11933 5' -62.6 NC_003278.1 + 22492 0.73 0.070681
Target:  5'- uUGCCgUCGACCGUGaGCCGGaacaCCGGCa -3'
miRNA:   3'- -ACGGgAGCUGGUACcCGGUCc---GGCUG- -5'
11933 5' -62.6 NC_003278.1 + 22491 0.69 0.146633
Target:  5'- cGCCCUgGACC-UGaccgacaaucgcGGCCucgAGGCCGAUc -3'
miRNA:   3'- aCGGGAgCUGGuAC------------CCGG---UCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 22199 1.08 0.000121
Target:  5'- gUGCCCUCGACCAUGGGCCAGGCCGACc -3'
miRNA:   3'- -ACGGGAGCUGGUACCCGGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 21627 0.66 0.24953
Target:  5'- gGCCaugcugggCGACC-UGGGCaagAGcGCCGGCg -3'
miRNA:   3'- aCGGga------GCUGGuACCCGg--UC-CGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 21576 0.68 0.187069
Target:  5'- gGCCCgcgcUGACCA--GGCCuuGGCCGAg -3'
miRNA:   3'- aCGGGa---GCUGGUacCCGGu-CCGGCUg -5'
11933 5' -62.6 NC_003278.1 + 21513 0.8 0.018545
Target:  5'- cGCCga-GGCCcUGGGCCAGGCCGGCc -3'
miRNA:   3'- aCGGgagCUGGuACCCGGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 21462 0.76 0.044571
Target:  5'- gGCCCagGGCCucggcgccGGCCAGGCCGGCc -3'
miRNA:   3'- aCGGGagCUGGuac-----CCGGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 20991 0.66 0.252099
Target:  5'- cGCCCUgCGcgucgugagcaucgcGCUGUgGGGCCuGGCCGcCa -3'
miRNA:   3'- aCGGGA-GC---------------UGGUA-CCCGGuCCGGCuG- -5'
11933 5' -62.6 NC_003278.1 + 20266 0.66 0.239474
Target:  5'- gGCCCUgcucggcaacgcuggCGuCCA-GGGCagcauGGCCGGCa -3'
miRNA:   3'- aCGGGA---------------GCuGGUaCCCGgu---CCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 19959 0.69 0.135029
Target:  5'- gUGCCCagGGCCAguacuuccUGGGCCGcaCCGGCu -3'
miRNA:   3'- -ACGGGagCUGGU--------ACCCGGUccGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 18967 0.66 0.24953
Target:  5'- aGCCCgaGGCCAccggcaUGGaCCcGGCCGACc -3'
miRNA:   3'- aCGGGagCUGGU------ACCcGGuCCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.