miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11933 5' -62.6 NC_003278.1 + 8066 0.66 0.24953
Target:  5'- cGCCgUCaACCGgaaGGGuuacgcCCAGGCCGAg -3'
miRNA:   3'- aCGGgAGcUGGUa--CCC------GGUCCGGCUg -5'
11933 5' -62.6 NC_003278.1 + 9909 0.76 0.038545
Target:  5'- cGCaCUCGGCCca-GGCCAGGCCGAUa -3'
miRNA:   3'- aCGgGAGCUGGuacCCGGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 9536 0.81 0.016008
Target:  5'- cGCCaaCUCGGCC-UGGGCCAGGCgGGCc -3'
miRNA:   3'- aCGG--GAGCUGGuACCCGGUCCGgCUG- -5'
11933 5' -62.6 NC_003278.1 + 22199 1.08 0.000121
Target:  5'- gUGCCCUCGACCAUGGGCCAGGCCGACc -3'
miRNA:   3'- -ACGGGAGCUGGUACCCGGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 4824 0.67 0.191614
Target:  5'- aGCgCCUCGGuacCCAggcuggcgGGggagucggugaugGCCAGGCCGACc -3'
miRNA:   3'- aCG-GGAGCU---GGUa-------CC-------------CGGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 21576 0.68 0.187069
Target:  5'- gGCCCgcgcUGACCA--GGCCuuGGCCGAg -3'
miRNA:   3'- aCGGGa---GCUGGUacCCGGu-CCGGCUg -5'
11933 5' -62.6 NC_003278.1 + 6271 0.68 0.177309
Target:  5'- aUGUUCUCGACCA-GGcaGCCgAGGCCGu- -3'
miRNA:   3'- -ACGGGAGCUGGUaCC--CGG-UCCGGCug -5'
11933 5' -62.6 NC_003278.1 + 31219 0.68 0.172601
Target:  5'- aGUCCUCGcACCAgagggcgcugGGcGCCAGGCgGGu -3'
miRNA:   3'- aCGGGAGC-UGGUa---------CC-CGGUCCGgCUg -5'
11933 5' -62.6 NC_003278.1 + 28290 0.7 0.117552
Target:  5'- aGCCg-CGGgCAUGGGCCagguacgcccGGGCCGAg -3'
miRNA:   3'- aCGGgaGCUgGUACCCGG----------UCCGGCUg -5'
11933 5' -62.6 NC_003278.1 + 17096 0.75 0.048618
Target:  5'- cGUCUUCGGCgGUGGcuaCCAGGCCGAUg -3'
miRNA:   3'- aCGGGAGCUGgUACCc--GGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 28066 0.71 0.096608
Target:  5'- gUGCCCUUGAUC--GGcGUCAGGCCGuACu -3'
miRNA:   3'- -ACGGGAGCUGGuaCC-CGGUCCGGC-UG- -5'
11933 5' -62.6 NC_003278.1 + 6375 0.69 0.150699
Target:  5'- aUGCCCUgGugCG-GGGCaguGGCCGcCg -3'
miRNA:   3'- -ACGGGAgCugGUaCCCGgu-CCGGCuG- -5'
11933 5' -62.6 NC_003278.1 + 9692 0.66 0.225027
Target:  5'- gGUCCUCGAUCAaGcguucgcggauGGCCAGcGCCuGGCg -3'
miRNA:   3'- aCGGGAGCUGGUaC-----------CCGGUC-CGG-CUG- -5'
11933 5' -62.6 NC_003278.1 + 14117 0.73 0.074199
Target:  5'- cGCCgUCGAUCGUcgccaggccguggcGGGCCAGGauguCCGGCg -3'
miRNA:   3'- aCGGgAGCUGGUA--------------CCCGGUCC----GGCUG- -5'
11933 5' -62.6 NC_003278.1 + 31801 0.67 0.219228
Target:  5'- gUGCCCgggacacCGGCCA-GGcGCUcgaagucgcggAGGCCGGCc -3'
miRNA:   3'- -ACGGGa------GCUGGUaCC-CGG-----------UCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 12337 0.69 0.154867
Target:  5'- cGCCCgguaugaCGccGCCGUGGGuaugaccgaCCAGGCUGAUg -3'
miRNA:   3'- aCGGGa------GC--UGGUACCC---------GGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 22492 0.73 0.070681
Target:  5'- uUGCCgUCGACCGUGaGCCGGaacaCCGGCa -3'
miRNA:   3'- -ACGGgAGCUGGUACcCGGUCc---GGCUG- -5'
11933 5' -62.6 NC_003278.1 + 21513 0.8 0.018545
Target:  5'- cGCCga-GGCCcUGGGCCAGGCCGGCc -3'
miRNA:   3'- aCGGgagCUGGuACCCGGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 31185 0.67 0.202596
Target:  5'- nGUgUUUGuCCGcUGGGCCAGGgCGGCc -3'
miRNA:   3'- aCGgGAGCuGGU-ACCCGGUCCgGCUG- -5'
11933 5' -62.6 NC_003278.1 + 27856 0.68 0.187069
Target:  5'- aGCaCUCGGCCAUGgcGGCUucguacuGGCUGACc -3'
miRNA:   3'- aCGgGAGCUGGUAC--CCGGu------CCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.