miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 8109 0.66 0.248262
Target:  5'- cCGGUGGC-CaGCCAGGCGCcgagcAGgGCa -3'
miRNA:   3'- uGUCGCCGuGgUGGUCCGCG-----UCgCGc -5'
11939 3' -62.8 NC_003278.1 + 2985 0.66 0.248262
Target:  5'- -uGGUGGCGCCuccggcgguACCGGGCgGCAaguuccGCGUGc -3'
miRNA:   3'- ugUCGCCGUGG---------UGGUCCG-CGU------CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 13898 0.66 0.248262
Target:  5'- uCAGCGaGCcgacgggcucgACCACgC-GGCGCAGgGCGc -3'
miRNA:   3'- uGUCGC-CG-----------UGGUG-GuCCGCGUCgCGC- -5'
11939 3' -62.8 NC_003278.1 + 9153 0.66 0.246357
Target:  5'- uCAGCGuGCAggccuucgccgaguCCAUgGGGCGUAGCGa- -3'
miRNA:   3'- uGUCGC-CGU--------------GGUGgUCCGCGUCGCgc -5'
11939 3' -62.8 NC_003278.1 + 19614 0.66 0.23579
Target:  5'- -gAGcCGGCGuuGCUgAGGCGCGuGCGCa -3'
miRNA:   3'- ugUC-GCCGUggUGG-UCCGCGU-CGCGc -5'
11939 3' -62.8 NC_003278.1 + 3063 0.66 0.23579
Target:  5'- cGCuGCGGCcguucggugAUCGCCAGGUGUGGCuggGCu -3'
miRNA:   3'- -UGuCGCCG---------UGGUGGUCCGCGUCG---CGc -5'
11939 3' -62.8 NC_003278.1 + 22963 0.66 0.232152
Target:  5'- cACGGUGGcCACCGcaucgaaguccucgcCCAGGCGUgucagcagguuGGCGuCGg -3'
miRNA:   3'- -UGUCGCC-GUGGU---------------GGUCCGCG-----------UCGC-GC- -5'
11939 3' -62.8 NC_003278.1 + 19226 0.66 0.229753
Target:  5'- uCGGCGGaacuCCGuacCCGGGCGCGuucGCGCc -3'
miRNA:   3'- uGUCGCCgu--GGU---GGUCCGCGU---CGCGc -5'
11939 3' -62.8 NC_003278.1 + 22471 0.66 0.229753
Target:  5'- aACAcCGGCACCggauaGCC-GGCGUcGCGCu -3'
miRNA:   3'- -UGUcGCCGUGG-----UGGuCCGCGuCGCGc -5'
11939 3' -62.8 NC_003278.1 + 31191 0.66 0.223848
Target:  5'- aGCAGauacccgaGGCccGCCGCCAGGCuGCuccgGGCuGCGa -3'
miRNA:   3'- -UGUCg-------CCG--UGGUGGUCCG-CG----UCG-CGC- -5'
11939 3' -62.8 NC_003278.1 + 7827 0.66 0.223848
Target:  5'- cCGGCGGUgcgaccguaguGCCGCCA-GCaCAGCGCc -3'
miRNA:   3'- uGUCGCCG-----------UGGUGGUcCGcGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 26867 0.66 0.223848
Target:  5'- gACcGCauCAUCGCCgAGGCGCuGCGCGa -3'
miRNA:   3'- -UGuCGccGUGGUGG-UCCGCGuCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 28093 0.66 0.223848
Target:  5'- gACAGCcccuGGUucauCCGCUgcGGGCGCGGCaaguGCGg -3'
miRNA:   3'- -UGUCG----CCGu---GGUGG--UCCGCGUCG----CGC- -5'
11939 3' -62.8 NC_003278.1 + 23208 0.66 0.223848
Target:  5'- -uGGCGGUcgCugUAGGUGUGGCGCa -3'
miRNA:   3'- ugUCGCCGugGugGUCCGCGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 8148 0.66 0.218071
Target:  5'- gACAGCaGGCGCgACCAGGCcuucagguccuGCuucGUGCc -3'
miRNA:   3'- -UGUCG-CCGUGgUGGUCCG-----------CGu--CGCGc -5'
11939 3' -62.8 NC_003278.1 + 21469 0.66 0.218071
Target:  5'- gGCcuCGGCGCCgGCCAGGCcgGCccgcugGGCGUGa -3'
miRNA:   3'- -UGucGCCGUGG-UGGUCCG--CG------UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 16715 0.66 0.218071
Target:  5'- uCAGCacugaGCAgUACCAGGCGCugcaGGCGUa -3'
miRNA:   3'- uGUCGc----CGUgGUGGUCCGCG----UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 9123 0.66 0.217501
Target:  5'- gGCGGCGGUaucgucgaucugGCgagcguuCGCCAGGCGCuGGUGCn -3'
miRNA:   3'- -UGUCGCCG------------UG-------GUGGUCCGCG-UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 4373 0.67 0.212423
Target:  5'- -gAGgGGCAUguUCGGGaCGCGcGCGCGg -3'
miRNA:   3'- ugUCgCCGUGguGGUCC-GCGU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 26565 0.67 0.212423
Target:  5'- --cGCGGC---GCCAGGUGguCAGCGCGa -3'
miRNA:   3'- uguCGCCGuggUGGUCCGC--GUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.