miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11942 5' -49.9 NC_003278.1 + 8768 0.65 0.885413
Target:  5'- cGGCGGCGcugacuGCUCgcaccugcuGCAgAACgCCg -3'
miRNA:   3'- -CCGCCGUu-----CGAGauuuu----CGUgUUG-GG- -5'
11942 5' -49.9 NC_003278.1 + 8645 0.66 0.880561
Target:  5'- cGGCGcCAAcCUCUAcGAGgACGGCCa -3'
miRNA:   3'- -CCGCcGUUcGAGAUuUUCgUGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 9605 0.66 0.880561
Target:  5'- aGCGGCAgcAGCUgCgccAGGCGCuGGCCa -3'
miRNA:   3'- cCGCCGU--UCGA-GauuUUCGUG-UUGGg -5'
11942 5' -49.9 NC_003278.1 + 6847 0.66 0.880561
Target:  5'- -cCGGCAucgaucuGCUC-AAgcGCGCGAUCCa -3'
miRNA:   3'- ccGCCGUu------CGAGaUUuuCGUGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 27923 0.66 0.87224
Target:  5'- gGGCGGUccucgaggauGcGCUUgcc--GCGCAGCCCc -3'
miRNA:   3'- -CCGCCG----------UuCGAGauuuuCGUGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 9621 0.66 0.87224
Target:  5'- gGGCcuGGC--GCUCgcggGAAAGgGCGGCCUc -3'
miRNA:   3'- -CCG--CCGuuCGAGa---UUUUCgUGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 2274 0.66 0.87224
Target:  5'- aGCGGC-GGCUCguac--CACcGCCCg -3'
miRNA:   3'- cCGCCGuUCGAGauuuucGUGuUGGG- -5'
11942 5' -49.9 NC_003278.1 + 23861 0.66 0.87224
Target:  5'- gGGCGGCAAcaUCgcuGAGUAgCGugCCg -3'
miRNA:   3'- -CCGCCGUUcgAGauuUUCGU-GUugGG- -5'
11942 5' -49.9 NC_003278.1 + 8165 0.66 0.86363
Target:  5'- aGGuCGGCAggaucAGCgacagcAGGCGCGACCa -3'
miRNA:   3'- -CC-GCCGU-----UCGagauu-UUCGUGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 22961 0.66 0.85474
Target:  5'- uGGCGGCAAGa-CUGccAGCG--GCCUg -3'
miRNA:   3'- -CCGCCGUUCgaGAUuuUCGUguUGGG- -5'
11942 5' -49.9 NC_003278.1 + 16917 0.66 0.85474
Target:  5'- aGGCGGgAAGCUUguacggcguGAAGCuACAagACgCCa -3'
miRNA:   3'- -CCGCCgUUCGAGau-------UUUCG-UGU--UG-GG- -5'
11942 5' -49.9 NC_003278.1 + 18000 0.66 0.85474
Target:  5'- aGGcCGGCAAGCU------GCGCAucACCUa -3'
miRNA:   3'- -CC-GCCGUUCGAgauuuuCGUGU--UGGG- -5'
11942 5' -49.9 NC_003278.1 + 6435 0.66 0.845581
Target:  5'- aGGCGGCu-GCgaucCUGAuacagcugggcGAGCuGCAGCUCa -3'
miRNA:   3'- -CCGCCGuuCGa---GAUU-----------UUCG-UGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 29402 0.66 0.845581
Target:  5'- cGGCGGCGugaUCgaGAAGGC-CAACgCCg -3'
miRNA:   3'- -CCGCCGUucgAGa-UUUUCGuGUUG-GG- -5'
11942 5' -49.9 NC_003278.1 + 32195 0.66 0.845581
Target:  5'- uGGUGGCGcGGCacgUCgaGAAAGUGCcGCCCu -3'
miRNA:   3'- -CCGCCGU-UCG---AGa-UUUUCGUGuUGGG- -5'
11942 5' -49.9 NC_003278.1 + 21863 0.66 0.845581
Target:  5'- aGGCGGCGcGC-CU----GCGC-GCCCg -3'
miRNA:   3'- -CCGCCGUuCGaGAuuuuCGUGuUGGG- -5'
11942 5' -49.9 NC_003278.1 + 19484 0.66 0.845581
Target:  5'- cGGCGGC-GGCcaucugCUGAGccAGUGCuuucACCCg -3'
miRNA:   3'- -CCGCCGuUCGa-----GAUUU--UCGUGu---UGGG- -5'
11942 5' -49.9 NC_003278.1 + 4372 0.66 0.841843
Target:  5'- aGgGGCAuGUUCgggacgcgcGCGCGGCCCa -3'
miRNA:   3'- cCgCCGUuCGAGauuuu----CGUGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 6077 0.67 0.826493
Target:  5'- cGGCGGCAGGC-CgcccauGCGCuuCUg -3'
miRNA:   3'- -CCGCCGUUCGaGauuuu-CGUGuuGGg -5'
11942 5' -49.9 NC_003278.1 + 34435 0.67 0.826493
Target:  5'- gGGCGGaAGGCgUCUGGuuAGCuuGGCCUg -3'
miRNA:   3'- -CCGCCgUUCG-AGAUUu-UCGugUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.