miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11951 5' -61.4 NC_003278.1 + 19695 0.66 0.329057
Target:  5'- cGCCUGGCUGUUGauGGCgCCauuggCCGCCu -3'
miRNA:   3'- -CGGACCGGUAGUggCUGaGGg----GGCGG- -5'
11951 5' -61.4 NC_003278.1 + 18673 0.66 0.329057
Target:  5'- cGCaaGGCCAUCGgcCUGuaaUCCcuuCCCGCCg -3'
miRNA:   3'- -CGgaCCGGUAGU--GGCug-AGG---GGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 31128 0.66 0.32124
Target:  5'- cCCUGGCCca-GCgGACaaaCaCCCGCCu -3'
miRNA:   3'- cGGACCGGuagUGgCUGag-G-GGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 6947 0.66 0.32124
Target:  5'- cUCUGGCgGUUgACCGAgCguaCCCCgCGCCc -3'
miRNA:   3'- cGGACCGgUAG-UGGCU-Ga--GGGG-GCGG- -5'
11951 5' -61.4 NC_003278.1 + 32307 0.66 0.313563
Target:  5'- cGCCgccGGCCcgaugCACCGugUgccaUCCCUGCa -3'
miRNA:   3'- -CGGa--CCGGua---GUGGCugA----GGGGGCGg -5'
11951 5' -61.4 NC_003278.1 + 9140 0.66 0.313563
Target:  5'- cGCCUGGgcuaCGUCAgCGuGCaggCCUUCGCCg -3'
miRNA:   3'- -CGGACCg---GUAGUgGC-UGa--GGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 19327 0.66 0.313563
Target:  5'- cGCCcgGGCCGUCGCgucGCUgCCuuGCa -3'
miRNA:   3'- -CGGa-CCGGUAGUGgc-UGAgGGggCGg -5'
11951 5' -61.4 NC_003278.1 + 33028 0.66 0.312045
Target:  5'- cGCaCUGGCCGacaccgCGCCGGCggauuggucgaaCCCaacuaCGCCg -3'
miRNA:   3'- -CG-GACCGGUa-----GUGGCUGa-----------GGGg----GCGG- -5'
11951 5' -61.4 NC_003278.1 + 28193 0.66 0.306026
Target:  5'- cGCC-GGCC---ACCGACaaggaaCCCgCCGCCu -3'
miRNA:   3'- -CGGaCCGGuagUGGCUGa-----GGG-GGCGG- -5'
11951 5' -61.4 NC_003278.1 + 8093 0.66 0.306026
Target:  5'- gGCCUGGUCG-CGCCuGCUgucgcugaUCCUGCCg -3'
miRNA:   3'- -CGGACCGGUaGUGGcUGAg-------GGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 9252 0.66 0.306026
Target:  5'- cGCUgaaGGCUcgaaaauggGCCGACUUCgCCCGCCu -3'
miRNA:   3'- -CGGa--CCGGuag------UGGCUGAGG-GGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 18359 0.66 0.298629
Target:  5'- gGCCUugaccgGGCCGUUcauGCCG---CCCCCGCg -3'
miRNA:   3'- -CGGA------CCGGUAG---UGGCugaGGGGGCGg -5'
11951 5' -61.4 NC_003278.1 + 11981 0.66 0.28922
Target:  5'- gGCgUGGUCcUgACCGGCUUguucagugaccugaUCCCGCCc -3'
miRNA:   3'- -CGgACCGGuAgUGGCUGAG--------------GGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 21538 0.66 0.28922
Target:  5'- gGCCgucaGGCUGUCGCCGGCcucgacggggaguuUgcccgaggCUCCCGCCc -3'
miRNA:   3'- -CGGa---CCGGUAGUGGCUG--------------A--------GGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 5178 0.67 0.284251
Target:  5'- aGUgUcGCCcUgACCGACugcuaaccgUCCCCCGCCc -3'
miRNA:   3'- -CGgAcCGGuAgUGGCUG---------AGGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 21022 0.67 0.284251
Target:  5'- gGCCUGGCCGcCAacCCGGuggUCCUggcaauugCCGCCg -3'
miRNA:   3'- -CGGACCGGUaGU--GGCUg--AGGG--------GGCGG- -5'
11951 5' -61.4 NC_003278.1 + 17037 0.67 0.27935
Target:  5'- gGCCUGGUagccaccgccgaagaCGCCGACgCCaCCGCCu -3'
miRNA:   3'- -CGGACCGgua------------GUGGCUGaGGgGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 30111 0.67 0.27727
Target:  5'- uGCUgaUGGCCAUCcgcGCCGAggCCCgCGUg -3'
miRNA:   3'- -CGG--ACCGGUAG---UGGCUgaGGGgGCGg -5'
11951 5' -61.4 NC_003278.1 + 20008 0.67 0.27727
Target:  5'- -aCUGGCCcUgGgCGACUUCCuuGUCg -3'
miRNA:   3'- cgGACCGGuAgUgGCUGAGGGggCGG- -5'
11951 5' -61.4 NC_003278.1 + 5049 0.67 0.270426
Target:  5'- uGCUcGGCgAUCGCuuCGACggCCUCGCCg -3'
miRNA:   3'- -CGGaCCGgUAGUG--GCUGagGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.