Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11960 | 5' | -59.3 | NC_003278.1 | + | 6579 | 0.66 | 0.424657 |
Target: 5'- uCGAUGCgccagagcaugaCGGUGGUgaccaccuCGUCcugGGCGCCCu -3' miRNA: 3'- -GCUACG------------GCCGCUAau------GCGG---CCGCGGG- -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 21931 | 0.67 | 0.336634 |
Target: 5'- cCGGuccUGCaGGCGGgcGCGCaGGCGCgCCg -3' miRNA: 3'- -GCU---ACGgCCGCUaaUGCGgCCGCG-GG- -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 31935 | 0.67 | 0.336634 |
Target: 5'- uGAUGaacaCGGCauccg-GUCGGCGCCCg -3' miRNA: 3'- gCUACg---GCCGcuaaugCGGCCGCGGG- -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 9083 | 0.82 | 0.032131 |
Target: 5'- uGGUGCuCGGCGGUgcCGCCGGCauagccGCCCg -3' miRNA: 3'- gCUACG-GCCGCUAauGCGGCCG------CGGG- -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 21598 | 0.66 | 0.387813 |
Target: 5'- uCGAgGCCGGCGAcagccugACgGCCcGCGCUg -3' miRNA: 3'- -GCUaCGGCCGCUaa-----UG-CGGcCGCGGg -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 26886 | 0.66 | 0.387813 |
Target: 5'- uGAUGgCGGUGGcgACGCCccuGGCGUa- -3' miRNA: 3'- gCUACgGCCGCUaaUGCGG---CCGCGgg -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 32769 | 0.66 | 0.377176 |
Target: 5'- aCGGUGCCGGCuGGgccgucccaGUCGGUGaCCg -3' miRNA: 3'- -GCUACGGCCG-CUaaug-----CGGCCGCgGG- -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 5871 | 0.67 | 0.370195 |
Target: 5'- ---aGUCGGCGucgGCGCCGuuGCCg -3' miRNA: 3'- gcuaCGGCCGCuaaUGCGGCcgCGGg -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 23417 | 0.67 | 0.361594 |
Target: 5'- ---gGCUGGUGAUguaaccgcCGUCGGCGCUg -3' miRNA: 3'- gcuaCGGCCGCUAau------GCGGCCGCGGg -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 14280 | 0.67 | 0.336634 |
Target: 5'- ---cGCCGGgCGcgc-CGCCGGCGUCa -3' miRNA: 3'- gcuaCGGCC-GCuaauGCGGCCGCGGg -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 23235 | 0.67 | 0.353133 |
Target: 5'- uCGgcGCgGGCGGc-GCGCagGGCGCUCu -3' miRNA: 3'- -GCuaCGgCCGCUaaUGCGg-CCGCGGG- -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 31686 | 0.67 | 0.361594 |
Target: 5'- uGAaGCCuGCG---GCGCCGcCGCCCa -3' miRNA: 3'- gCUaCGGcCGCuaaUGCGGCcGCGGG- -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 8950 | 0.66 | 0.424657 |
Target: 5'- gGAuUGCCGGCu----UGCCGuuGCCCa -3' miRNA: 3'- gCU-ACGGCCGcuaauGCGGCcgCGGG- -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 18482 | 0.67 | 0.351458 |
Target: 5'- uGA-GCCGGCGAagcgcagcaugACGCCGuuggcacugacuGCGCCg -3' miRNA: 3'- gCUaCGGCCGCUaa---------UGCGGC------------CGCGGg -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 28182 | 0.66 | 0.41525 |
Target: 5'- -uGUGCCaGGUGu---CGCCGcacuugccGCGCCCg -3' miRNA: 3'- gcUACGG-CCGCuaauGCGGC--------CGCGGG- -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 9759 | 0.67 | 0.362448 |
Target: 5'- ---aGCCGGCGAgcaacaucaggcagAgGCUGGUcaGCCCa -3' miRNA: 3'- gcuaCGGCCGCUaa------------UgCGGCCG--CGGG- -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 7836 | 0.67 | 0.336634 |
Target: 5'- uCGGUcacGCCGGCGG-UGCGaCCGuaGUGCCg -3' miRNA: 3'- -GCUA---CGGCCGCUaAUGC-GGC--CGCGGg -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 12953 | 0.67 | 0.336634 |
Target: 5'- aGcAUGuuGGCGAgagccgccucgUUGaccCGCUGGCGCCa -3' miRNA: 3'- gC-UACggCCGCU-----------AAU---GCGGCCGCGGg -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 5507 | 0.66 | 0.387813 |
Target: 5'- uCGGUacgGCUGGCGAUggugccgcugACGCCGaUGCCg -3' miRNA: 3'- -GCUA---CGGCCGCUAa---------UGCGGCcGCGGg -5' |
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11960 | 5' | -59.3 | NC_003278.1 | + | 29886 | 0.66 | 0.387813 |
Target: 5'- gGAcuUGgCGGCGc---CGCCGGCGCg- -3' miRNA: 3'- gCU--ACgGCCGCuaauGCGGCCGCGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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