miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11971 5' -61 NC_003278.1 + 13596 0.66 0.2988
Target:  5'- cAGCGUAAUUCCGguGCaGUagGGCGCCUGg -3'
miRNA:   3'- -UCGCGUUGGGGC--UGcCG--UCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 21120 0.66 0.291358
Target:  5'- cGGCGcCGGCCagcaccgccaCGACGGCGGCaauuGCCa-- -3'
miRNA:   3'- -UCGC-GUUGGg---------GCUGCCGUCG----CGGaua -5'
11971 5' -61 NC_003278.1 + 8340 0.66 0.291358
Target:  5'- cAGCGaccuCCUCGGauGCGGCGCCa-- -3'
miRNA:   3'- -UCGCguu-GGGGCUgcCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 31257 0.66 0.284062
Target:  5'- uGCGCGagcACCCCG-C-GCGGCGCUg-- -3'
miRNA:   3'- uCGCGU---UGGGGCuGcCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 7419 0.66 0.276912
Target:  5'- uAGCGCucggccACUUCGGCGGCGGUGgCa-- -3'
miRNA:   3'- -UCGCGu-----UGGGGCUGCCGUCGCgGaua -5'
11971 5' -61 NC_003278.1 + 26928 0.66 0.276912
Target:  5'- cGCGCAgcGCCUCGGCGaugauGCGgucgaccucaccGCGCCUGa -3'
miRNA:   3'- uCGCGU--UGGGGCUGC-----CGU------------CGCGGAUa -5'
11971 5' -61 NC_003278.1 + 14959 0.66 0.276912
Target:  5'- gGGCGCuGCaagCCGGCuGGCAGUGgCUGc -3'
miRNA:   3'- -UCGCGuUGg--GGCUG-CCGUCGCgGAUa -5'
11971 5' -61 NC_003278.1 + 13677 0.66 0.263043
Target:  5'- uGCGCcagGGCUUCGGCGGCcaGGCGCUc-- -3'
miRNA:   3'- uCGCG---UUGGGGCUGCCG--UCGCGGaua -5'
11971 5' -61 NC_003278.1 + 9681 0.66 0.263043
Target:  5'- aAGCGUu-CgCgGAUGGcCAGCGCCUGg -3'
miRNA:   3'- -UCGCGuuGgGgCUGCC-GUCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 19795 0.67 0.249744
Target:  5'- cGGUGcCGGCCagCG-CGGCAGCGCuCUGg -3'
miRNA:   3'- -UCGC-GUUGGg-GCuGCCGUCGCG-GAUa -5'
11971 5' -61 NC_003278.1 + 22126 0.67 0.249744
Target:  5'- cGGC-CAGCUCCGGCaGCAGCacGCCg-- -3'
miRNA:   3'- -UCGcGUUGGGGCUGcCGUCG--CGGaua -5'
11971 5' -61 NC_003278.1 + 29246 0.67 0.249744
Target:  5'- cGGCGUGGCCgCCGGugcgaucuucacCGGCAGCGgCg-- -3'
miRNA:   3'- -UCGCGUUGG-GGCU------------GCCGUCGCgGaua -5'
11971 5' -61 NC_003278.1 + 22405 0.67 0.249744
Target:  5'- cAGCGCGACgCCGGCuaucCGGUGCCg-- -3'
miRNA:   3'- -UCGCGUUGgGGCUGcc--GUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 9106 0.67 0.247797
Target:  5'- gGGCGCcuUCCaGAucaugggguuccacUGGCAGCGCCUGg -3'
miRNA:   3'- -UCGCGuuGGGgCU--------------GCCGUCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 696 0.67 0.237004
Target:  5'- aGGCGaacauuCCCCuaGugGGCGGCGCUg-- -3'
miRNA:   3'- -UCGCguu---GGGG--CugCCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 8645 0.67 0.230841
Target:  5'- cGGCGcCAACCUCuacgagGACGGCcacuucGGCGCCg-- -3'
miRNA:   3'- -UCGC-GUUGGGG------CUGCCG------UCGCGGaua -5'
11971 5' -61 NC_003278.1 + 21681 0.67 0.230841
Target:  5'- cGGCGCcagcGCCCCGGCG-CAG-GCCa-- -3'
miRNA:   3'- -UCGCGu---UGGGGCUGCcGUCgCGGaua -5'
11971 5' -61 NC_003278.1 + 19277 0.67 0.230232
Target:  5'- cGCGaCGGCCCgGGCGcucaaggcaacucGCgAGCGCCUGa -3'
miRNA:   3'- uCGC-GUUGGGgCUGC-------------CG-UCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 2037 0.67 0.224814
Target:  5'- cGGCGCAuguaCuuGGCcaGCGGCGCCUGc -3'
miRNA:   3'- -UCGCGUug--GggCUGc-CGUCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 6091 0.68 0.218921
Target:  5'- uAGgGCAcuuCCaCCGGCGGCAG-GCCg-- -3'
miRNA:   3'- -UCgCGUu--GG-GGCUGCCGUCgCGGaua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.