Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11980 | 5' | -63.6 | NC_003278.1 | + | 19647 | 0.66 | 0.291657 |
Target: 5'- gUCGCGCUcaugcugGCCGA-GGUUGCGggugcugagcCGGCg -3' miRNA: 3'- gGGCGCGG-------CGGCUgCCAGCGCa---------GCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 29370 | 0.66 | 0.271985 |
Target: 5'- gCCUGCuaCGUucugggcgacgUGGCGGUgCGCGgCGGCg -3' miRNA: 3'- -GGGCGcgGCG-----------GCUGCCA-GCGCaGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 7761 | 0.66 | 0.278645 |
Target: 5'- gCUGUGCUGgCGgcacuACGGUCGCaccGcCGGCg -3' miRNA: 3'- gGGCGCGGCgGC-----UGCCAGCG---CaGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 31635 | 0.66 | 0.284067 |
Target: 5'- gCgGCGCCGCaggcuucaaccgGGCGcGUcCGCGggUCGGCa -3' miRNA: 3'- gGgCGCGGCGg-----------CUGC-CA-GCGC--AGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 20798 | 0.66 | 0.285435 |
Target: 5'- gCCGCGUuuucggCGCUGAUGGcuacCGUUGGCa -3' miRNA: 3'- gGGCGCG------GCGGCUGCCagc-GCAGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 26564 | 0.66 | 0.285435 |
Target: 5'- -aCGCGgCGCCaGGUGGUCaGCGcgaucaUCGGCg -3' miRNA: 3'- ggGCGCgGCGG-CUGCCAG-CGC------AGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 8104 | 0.66 | 0.292355 |
Target: 5'- gCCUGCuGUCGCUGAuccugcCGaccUGCGUCGGCu -3' miRNA: 3'- -GGGCG-CGGCGGCU------GCca-GCGCAGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 22384 | 0.66 | 0.292355 |
Target: 5'- aCCaGCGCCGUCGACcaguugcagCGCGacgcCGGCu -3' miRNA: 3'- gGG-CGCGGCGGCUGcca------GCGCa---GCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 12336 | 0.66 | 0.292355 |
Target: 5'- gCCCGguaugaCGCCGCCGugGGUaugacCGaccaGGCu -3' miRNA: 3'- -GGGC------GCGGCGGCugCCA-----GCgcagCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 29868 | 0.66 | 0.259048 |
Target: 5'- uUCaaGCCGCUGuucaACGGUCGCGcguUgGGCg -3' miRNA: 3'- gGGcgCGGCGGC----UGCCAGCGC---AgCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 3600 | 0.66 | 0.291657 |
Target: 5'- aCCCGaucaucCUGCCGaACGG-CGCGgaauugcacuuccUCGGCa -3' miRNA: 3'- -GGGCgc----GGCGGC-UGCCaGCGC-------------AGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 19452 | 0.66 | 0.265452 |
Target: 5'- aCCCGUGCCuGuuGcGCGGccaGCG-CGGUg -3' miRNA: 3'- -GGGCGCGG-CggC-UGCCag-CGCaGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 8811 | 0.66 | 0.259048 |
Target: 5'- --aGCGCCGCCGAgGGcggccagggucuUCGgGccagcgaugccaUCGGCg -3' miRNA: 3'- gggCGCGGCGGCUgCC------------AGCgC------------AGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 16699 | 0.66 | 0.265452 |
Target: 5'- gUCgGUGUCGUCGagcugGCGGUCGCGccaaUCGcGCu -3' miRNA: 3'- -GGgCGCGGCGGC-----UGCCAGCGC----AGC-CG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 21505 | 0.66 | 0.285435 |
Target: 5'- cCCUGgGCCagGCCGGCcauGGUgaaccCGCccagGUCGGCg -3' miRNA: 3'- -GGGCgCGG--CGGCUG---CCA-----GCG----CAGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 23265 | 0.66 | 0.265452 |
Target: 5'- gUgGCGCUGCCacgcuguaGGCGGUuccacucggCGCGggCGGCg -3' miRNA: 3'- gGgCGCGGCGG--------CUGCCA---------GCGCa-GCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 21835 | 0.66 | 0.271985 |
Target: 5'- gCCCGCGCCgGCCugGAUGGUgauguaguaaGUGUCGccGCc -3' miRNA: 3'- -GGGCGCGG-CGG--CUGCCAg---------CGCAGC--CG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 31439 | 0.66 | 0.271985 |
Target: 5'- -gCGaGCCGCCGACguGGUUGUGcuagccUUGGCg -3' miRNA: 3'- ggGCgCGGCGGCUG--CCAGCGC------AGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 27016 | 0.67 | 0.234687 |
Target: 5'- aCUGCGCCGacuuCGGCauGUCGUG-CGGCc -3' miRNA: 3'- gGGCGCGGCg---GCUGc-CAGCGCaGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 17474 | 0.67 | 0.240591 |
Target: 5'- uCuuGCaGCCGCUGGCGGagacauaaGCGaaGGCg -3' miRNA: 3'- -GggCG-CGGCGGCUGCCag------CGCagCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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