miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11980 5' -63.6 NC_003278.1 + 33032 0.72 0.110319
Target:  5'- gCCGCGCacugGCCGACac-CGCGcCGGCg -3'
miRNA:   3'- gGGCGCGg---CGGCUGccaGCGCaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 32552 0.68 0.188809
Target:  5'- aCCCGCGCgCGCCGGCaaaCGCccugcaauaccagcaGUaCGGCg -3'
miRNA:   3'- -GGGCGCG-GCGGCUGccaGCG---------------CA-GCCG- -5'
11980 5' -63.6 NC_003278.1 + 32315 0.7 0.144018
Target:  5'- gCCGaggauGUCGCCGACGG-CGCG-CaGGCu -3'
miRNA:   3'- gGGCg----CGGCGGCUGCCaGCGCaG-CCG- -5'
11980 5' -63.6 NC_003278.1 + 32024 0.7 0.135519
Target:  5'- aCCCgGUGCCGCUGAUcGUCuucgagaacgucccGCGUCuGGCg -3'
miRNA:   3'- -GGG-CGCGGCGGCUGcCAG--------------CGCAG-CCG- -5'
11980 5' -63.6 NC_003278.1 + 31917 0.75 0.065703
Target:  5'- gUCgGCGcCCGCCGGCGG-CGCGgCGGa -3'
miRNA:   3'- -GGgCGC-GGCGGCUGCCaGCGCaGCCg -5'
11980 5' -63.6 NC_003278.1 + 31860 0.79 0.028453
Target:  5'- gCCGCGCCGCCGGCGGgCGCcgacCGGa -3'
miRNA:   3'- gGGCGCGGCGGCUGCCaGCGca--GCCg -5'
11980 5' -63.6 NC_003278.1 + 31635 0.66 0.284067
Target:  5'- gCgGCGCCGCaggcuucaaccgGGCGcGUcCGCGggUCGGCa -3'
miRNA:   3'- gGgCGCGGCGg-----------CUGC-CA-GCGC--AGCCG- -5'
11980 5' -63.6 NC_003278.1 + 31439 0.66 0.271985
Target:  5'- -gCGaGCCGCCGACguGGUUGUGcuagccUUGGCg -3'
miRNA:   3'- ggGCgCGGCGGCUG--CCAGCGC------AGCCG- -5'
11980 5' -63.6 NC_003278.1 + 30554 0.68 0.212279
Target:  5'- gCCGCGUCGgccaccuuCUGGCGGU-G-GUCGGCg -3'
miRNA:   3'- gGGCGCGGC--------GGCUGCCAgCgCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 30412 0.67 0.217702
Target:  5'- aCUCG-GCCaCCu-CGGgCGCGUCGGCg -3'
miRNA:   3'- -GGGCgCGGcGGcuGCCaGCGCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 29879 0.78 0.032745
Target:  5'- gCgGCGCCGCCGGCGcggcuguuGUCGCugcgGUCGGCc -3'
miRNA:   3'- gGgCGCGGCGGCUGC--------CAGCG----CAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 29868 0.66 0.259048
Target:  5'- uUCaaGCCGCUGuucaACGGUCGCGcguUgGGCg -3'
miRNA:   3'- gGGcgCGGCGGC----UGCCAGCGC---AgCCG- -5'
11980 5' -63.6 NC_003278.1 + 29370 0.66 0.271985
Target:  5'- gCCUGCuaCGUucugggcgacgUGGCGGUgCGCGgCGGCg -3'
miRNA:   3'- -GGGCGcgGCG-----------GCUGCCA-GCGCaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 29321 0.69 0.182132
Target:  5'- -gCGCGCCGCUGcCGGugaagaUCGCacCGGCg -3'
miRNA:   3'- ggGCGCGGCGGCuGCC------AGCGcaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 28516 0.7 0.144018
Target:  5'- aUCGCGCUGCUGcaccACGGcaucgacgcCGUGUCGGCc -3'
miRNA:   3'- gGGCGCGGCGGC----UGCCa--------GCGCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 28267 0.68 0.191736
Target:  5'- gCCCGgGCCGaggCGGCGGguucCuuGUCGGUg -3'
miRNA:   3'- -GGGCgCGGCg--GCUGCCa---GcgCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 27016 0.67 0.234687
Target:  5'- aCUGCGCCGacuuCGGCauGUCGUG-CGGCc -3'
miRNA:   3'- gGGCGCGGCg---GCUGc-CAGCGCaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 26894 0.68 0.206972
Target:  5'- aCCGCGCCugaUGGCGGUgGCGacgccccUGGCg -3'
miRNA:   3'- gGGCGCGGcg-GCUGCCAgCGCa------GCCG- -5'
11980 5' -63.6 NC_003278.1 + 26564 0.66 0.285435
Target:  5'- -aCGCGgCGCCaGGUGGUCaGCGcgaucaUCGGCg -3'
miRNA:   3'- ggGCGCgGCGG-CUGCCAG-CGC------AGCCG- -5'
11980 5' -63.6 NC_003278.1 + 23491 0.68 0.206972
Target:  5'- gCCGguguaGUCGCCGcCGGUguCGUCGGCc -3'
miRNA:   3'- gGGCg----CGGCGGCuGCCAgcGCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.