miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12019 5' -54.8 NC_003278.1 + 14334 0.66 0.640628
Target:  5'- aGCGCUGG-CGAaucaGCuUGGUcugaGCGGCCg -3'
miRNA:   3'- cCGCGACUaGCUac--CG-ACCA----UGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 20964 0.66 0.629244
Target:  5'- cGGCcuGUUGAUCGGcccGCUGGUGaccGCCc -3'
miRNA:   3'- -CCG--CGACUAGCUac-CGACCAUgu-CGG- -5'
12019 5' -54.8 NC_003278.1 + 33183 0.66 0.617864
Target:  5'- uGGCGCgagcgGAUCGGcaaugcGGUUccgccGGcUGCGGCCg -3'
miRNA:   3'- -CCGCGa----CUAGCUa-----CCGA-----CC-AUGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 27764 0.66 0.617864
Target:  5'- --gGCUGAgaaguaccugCucUGGCUGGU-CAGCCa -3'
miRNA:   3'- ccgCGACUa---------GcuACCGACCAuGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 16542 0.66 0.606496
Target:  5'- gGGacuGUUGAUCGucgcUGGCgaggaUGG-ACAGCCg -3'
miRNA:   3'- -CCg--CGACUAGCu---ACCG-----ACCaUGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 28835 0.66 0.595152
Target:  5'- cGGcCGCgucAUCGAUGaacauccagcGCUGGUGCAgGUCg -3'
miRNA:   3'- -CC-GCGac-UAGCUAC----------CGACCAUGU-CGG- -5'
12019 5' -54.8 NC_003278.1 + 2547 0.66 0.595152
Target:  5'- aGGC-CaGAUCGGcgUGGCcGGUguugucguuGCGGCCg -3'
miRNA:   3'- -CCGcGaCUAGCU--ACCGaCCA---------UGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 4302 0.66 0.583842
Target:  5'- cGGCGCuacUGAggggCGA-GGgUGGgcgGCAGCa -3'
miRNA:   3'- -CCGCG---ACUa---GCUaCCgACCa--UGUCGg -5'
12019 5' -54.8 NC_003278.1 + 15480 0.66 0.582713
Target:  5'- aGCGUUGAucccaacUCGGUGGUcauuccgcUGGUACuGaCCa -3'
miRNA:   3'- cCGCGACU-------AGCUACCG--------ACCAUGuC-GG- -5'
12019 5' -54.8 NC_003278.1 + 22452 0.67 0.572575
Target:  5'- cGGCGUcgcgcugcaacUGGUCGAcgGcGCUGGUcaggUAGCCc -3'
miRNA:   3'- -CCGCG-----------ACUAGCUa-C-CGACCAu---GUCGG- -5'
12019 5' -54.8 NC_003278.1 + 8249 0.67 0.569205
Target:  5'- gGGCGCaGA-CGAaGGCagagaaagccagguUGGU-CAGCCa -3'
miRNA:   3'- -CCGCGaCUaGCUaCCG--------------ACCAuGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 6778 0.67 0.56136
Target:  5'- cGGC-CUGGUCGGUGaGCaggagGGUGCGauGCa -3'
miRNA:   3'- -CCGcGACUAGCUAC-CGa----CCAUGU--CGg -5'
12019 5' -54.8 NC_003278.1 + 35500 0.67 0.528113
Target:  5'- gGGCGCUGc-UGGUGGCUuucUGCGGCg -3'
miRNA:   3'- -CCGCGACuaGCUACCGAcc-AUGUCGg -5'
12019 5' -54.8 NC_003278.1 + 21288 0.68 0.517189
Target:  5'- cGGCaacaUGAUCGuccagGGcCUGGUgaACGGCCu -3'
miRNA:   3'- -CCGcg--ACUAGCua---CC-GACCA--UGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 21657 0.68 0.517189
Target:  5'- cGGCGCc-AUCGGUGccCUGGUGCucggcGCCa -3'
miRNA:   3'- -CCGCGacUAGCUACc-GACCAUGu----CGG- -5'
12019 5' -54.8 NC_003278.1 + 8024 0.68 0.495623
Target:  5'- uGGCGCcggccgUGG-CGGUGGUggugaGGU-CAGCCa -3'
miRNA:   3'- -CCGCG------ACUaGCUACCGa----CCAuGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 31204 0.68 0.494555
Target:  5'- gGGCGCUGggCGccaggcggGUGuuuguccGCUGGgccaggGCGGCCu -3'
miRNA:   3'- -CCGCGACuaGC--------UAC-------CGACCa-----UGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 26883 0.68 0.493488
Target:  5'- aGGCGCUGcgCGAUGGagagaucgACgaGGCCg -3'
miRNA:   3'- -CCGCGACuaGCUACCgacca---UG--UCGG- -5'
12019 5' -54.8 NC_003278.1 + 22916 0.68 0.484993
Target:  5'- uGGCGUcgGAcUCGuUGGcCUGGUcCAGCUg -3'
miRNA:   3'- -CCGCGa-CU-AGCuACC-GACCAuGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 20808 0.68 0.474474
Target:  5'- cGGCGCUGA----UGGCUaccGUugGCAGCCu -3'
miRNA:   3'- -CCGCGACUagcuACCGAc--CA--UGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.