miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12021 5' -59.6 NC_003278.1 + 35024 0.68 0.293596
Target:  5'- uGCCGuCC-CAG-GGCAACAGCCGg- -3'
miRNA:   3'- cCGGCuGGcGUCgCUGUUGUCGGCgc -5'
12021 5' -59.6 NC_003278.1 + 34412 0.66 0.374004
Target:  5'- uGGCCugcuGCUGCAGUGcgcGCAGC-GCCGgGg -3'
miRNA:   3'- -CCGGc---UGGCGUCGC---UGUUGuCGGCgC- -5'
12021 5' -59.6 NC_003278.1 + 33899 0.7 0.221447
Target:  5'- aGCCGcggaaGCCGCuGGCGGCAAUcuGGuuGCGu -3'
miRNA:   3'- cCGGC-----UGGCG-UCGCUGUUG--UCggCGC- -5'
12021 5' -59.6 NC_003278.1 + 33852 0.75 0.09721
Target:  5'- cGGCUu-CCGCGGCuACAcCAGCCGCGu -3'
miRNA:   3'- -CCGGcuGGCGUCGcUGUuGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 33266 0.7 0.221447
Target:  5'- uGGCCucGGCCGCAGcCGGCGGaa-CCGCa -3'
miRNA:   3'- -CCGG--CUGGCGUC-GCUGUUgucGGCGc -5'
12021 5' -59.6 NC_003278.1 + 33211 0.66 0.374004
Target:  5'- cGCCGGCUGCGGCcgaGGCcAUcGCCgGCGu -3'
miRNA:   3'- cCGGCUGGCGUCG---CUGuUGuCGG-CGC- -5'
12021 5' -59.6 NC_003278.1 + 32983 0.74 0.111943
Target:  5'- cGGCCaGugCGCGGCacGACAACGGUCGaUGg -3'
miRNA:   3'- -CCGG-CugGCGUCG--CUGUUGUCGGC-GC- -5'
12021 5' -59.6 NC_003278.1 + 32353 0.71 0.168134
Target:  5'- gGGCCGgcggcgucgauaucGCCggGCAGCGGCAuGCGGCCGa- -3'
miRNA:   3'- -CCGGC--------------UGG--CGUCGCUGU-UGUCGGCgc -5'
12021 5' -59.6 NC_003278.1 + 32251 0.73 0.136098
Target:  5'- aGCCugcgcGCCGuCGGCGACAuccuCGGCCGCa -3'
miRNA:   3'- cCGGc----UGGC-GUCGCUGUu---GUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 32208 0.69 0.239485
Target:  5'- gGGCCaGACCGCccAGCucGCcGCAGUCGUGa -3'
miRNA:   3'- -CCGG-CUGGCG--UCGc-UGuUGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 32116 0.71 0.174169
Target:  5'- uGCCGGCCGCGGCu-CGcCAGaCGCGg -3'
miRNA:   3'- cCGGCUGGCGUCGcuGUuGUCgGCGC- -5'
12021 5' -59.6 NC_003278.1 + 31859 0.66 0.40087
Target:  5'- cGCCGcGCCGCcggcgGGCGcCGACcggauGCCGUGu -3'
miRNA:   3'- cCGGC-UGGCG-----UCGCuGUUGu----CGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 31556 0.68 0.265425
Target:  5'- cGGCCaGGaaaaCGCAGgGAgGGCGGCgGCa -3'
miRNA:   3'- -CCGG-CUg---GCGUCgCUgUUGUCGgCGc -5'
12021 5' -59.6 NC_003278.1 + 31458 0.68 0.265425
Target:  5'- uGGCC-AUCGCugGGCGAguGCgAGCCGCc -3'
miRNA:   3'- -CCGGcUGGCG--UCGCUguUG-UCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 31203 0.66 0.382823
Target:  5'- aGGCCcGCCGCcaggcugcuccgGGCuGCGAguGCUGCa -3'
miRNA:   3'- -CCGGcUGGCG------------UCGcUGUUguCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 31035 0.7 0.215696
Target:  5'- cGCUgGGCCGCAGCGACGcuuGCAGCa--- -3'
miRNA:   3'- cCGG-CUGGCGUCGCUGU---UGUCGgcgc -5'
12021 5' -59.6 NC_003278.1 + 30873 0.66 0.37313
Target:  5'- uGGCCG-CUGUcgcgcugGGCGAuCGGCAGCagGCGu -3'
miRNA:   3'- -CCGGCuGGCG-------UCGCU-GUUGUCGg-CGC- -5'
12021 5' -59.6 NC_003278.1 + 30812 0.79 0.044663
Target:  5'- uGCCGAUCGCccagcGCGACAGCGGCCagaGCGg -3'
miRNA:   3'- cCGGCUGGCGu----CGCUGUUGUCGG---CGC- -5'
12021 5' -59.6 NC_003278.1 + 30249 0.66 0.365325
Target:  5'- uGGUCGACgCGCuGCGcCugguGguGCCGCu -3'
miRNA:   3'- -CCGGCUG-GCGuCGCuGu---UguCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 30053 0.68 0.279228
Target:  5'- aGCCaGGCCGCAGcCGACAACcucaaccaccuGGgCGUGc -3'
miRNA:   3'- cCGG-CUGGCGUC-GCUGUUG-----------UCgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.