miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12026 5' -54.5 NC_003278.1 + 26877 0.66 0.667161
Target:  5'- uCGCCGAGGCgcuGCGCGAUgGagaGaUCGa -3'
miRNA:   3'- -GCGGUUCCGau-CGUGUUGgUg--C-AGCc -5'
12026 5' -54.5 NC_003278.1 + 21462 0.66 0.667161
Target:  5'- gGcCCAGGGCcucGGCGcCGGCCAgGcCGGc -3'
miRNA:   3'- gC-GGUUCCGa--UCGU-GUUGGUgCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 9094 0.66 0.667161
Target:  5'- uCGCCAGGcGCUGGUGCucggcgguGCCGC--CGGc -3'
miRNA:   3'- -GCGGUUC-CGAUCGUGu-------UGGUGcaGCC- -5'
12026 5' -54.5 NC_003278.1 + 23394 0.66 0.667161
Target:  5'- gCGCUGAGGCUGugcuGCACAuuGCCGCcGUa-- -3'
miRNA:   3'- -GCGGUUCCGAU----CGUGU--UGGUG-CAgcc -5'
12026 5' -54.5 NC_003278.1 + 8056 0.66 0.659233
Target:  5'- gCGCCu-GGCUggccaccGGCACGaagcaggaccugaagGCCugGUCGc -3'
miRNA:   3'- -GCGGuuCCGA-------UCGUGU---------------UGGugCAGCc -5'
12026 5' -54.5 NC_003278.1 + 26569 0.66 0.655831
Target:  5'- gCGCCAGguGGUcAGCGCGAUCA--UCGGc -3'
miRNA:   3'- -GCGGUU--CCGaUCGUGUUGGUgcAGCC- -5'
12026 5' -54.5 NC_003278.1 + 6255 0.66 0.644477
Target:  5'- aGCCGAGGCcgUAGUccuCGACgACGUaGGc -3'
miRNA:   3'- gCGGUUCCG--AUCGu--GUUGgUGCAgCC- -5'
12026 5' -54.5 NC_003278.1 + 17722 0.66 0.644477
Target:  5'- uGCUggGGCUcuGCAgGucccagaaCACGUCGGc -3'
miRNA:   3'- gCGGuuCCGAu-CGUgUug------GUGCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 3521 0.66 0.644477
Target:  5'- uGCCGAGGa-AGUGCAAuuCCGCGccguUCGGc -3'
miRNA:   3'- gCGGUUCCgaUCGUGUU--GGUGC----AGCC- -5'
12026 5' -54.5 NC_003278.1 + 9528 0.66 0.633112
Target:  5'- cCGCC-AGGCcGGCACcAUCACGgcccUCGa -3'
miRNA:   3'- -GCGGuUCCGaUCGUGuUGGUGC----AGCc -5'
12026 5' -54.5 NC_003278.1 + 26644 0.66 0.633112
Target:  5'- cCGCCAGGGUaGGCGCcgauGAUCGCGcUGa -3'
miRNA:   3'- -GCGGUUCCGaUCGUG----UUGGUGCaGCc -5'
12026 5' -54.5 NC_003278.1 + 16725 0.66 0.621745
Target:  5'- uCGUCGcGGUgacGUGCGACCaggGCGUCGGu -3'
miRNA:   3'- -GCGGUuCCGau-CGUGUUGG---UGCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 4993 0.66 0.614929
Target:  5'- cCGUCGAaGCgaucgccgAGCACAGCCGCGaccugggugagcaacUCGGc -3'
miRNA:   3'- -GCGGUUcCGa-------UCGUGUUGGUGC---------------AGCC- -5'
12026 5' -54.5 NC_003278.1 + 3988 0.66 0.610388
Target:  5'- gCGCCAGGcGCggauccAGCGCuACCAgGgCGGu -3'
miRNA:   3'- -GCGGUUC-CGa-----UCGUGuUGGUgCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 19818 0.66 0.609254
Target:  5'- gGCguGGGCUAcgaguucGaCGCAACgAUGUCGGc -3'
miRNA:   3'- gCGguUCCGAU-------C-GUGUUGgUGCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 11845 0.67 0.587745
Target:  5'- uGCCGAGGCggaucaGGUucuCGAUCAUG-CGGg -3'
miRNA:   3'- gCGGUUCCGa-----UCGu--GUUGGUGCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 28682 0.67 0.587745
Target:  5'- uGaCCGAGGCgcGCGCccugGGCUACGUCu- -3'
miRNA:   3'- gC-GGUUCCGauCGUG----UUGGUGCAGcc -5'
12026 5' -54.5 NC_003278.1 + 29800 0.67 0.587745
Target:  5'- uGCuCGAGGCcgaccgcAGCgacaACAGCCGCGcCGGc -3'
miRNA:   3'- gCG-GUUCCGa------UCG----UGUUGGUGCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 19722 0.67 0.587745
Target:  5'- aGCCGcGGCauccagAGCGCuGCCGCGcUGGc -3'
miRNA:   3'- gCGGUuCCGa-----UCGUGuUGGUGCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 7208 0.67 0.576477
Target:  5'- uGCCGcGGUgaucAGCGuCAACCGCGagcugCGGg -3'
miRNA:   3'- gCGGUuCCGa---UCGU-GUUGGUGCa----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.