miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12032 3' -61.8 NC_003278.1 + 33425 1.1 0.000097
Target:  5'- uCGCUGGCAACCCUGGCCGUCCUGGCCu -3'
miRNA:   3'- -GCGACCGUUGGGACCGGCAGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 32813 0.74 0.071616
Target:  5'- cCGCgacaGCAaaugcACCCUGGCCGguaguaCUGGCCg -3'
miRNA:   3'- -GCGac--CGU-----UGGGACCGGCag----GACCGG- -5'
12032 3' -61.8 NC_003278.1 + 31575 0.68 0.199452
Target:  5'- aGCUGGCccacucgacAGCCUUGGCC-UgUUGGCg -3'
miRNA:   3'- gCGACCG---------UUGGGACCGGcAgGACCGg -5'
12032 3' -61.8 NC_003278.1 + 29796 0.73 0.084944
Target:  5'- gCGCaGGCccGCCUUGGUCaucuucgacggGUCCUGGCCu -3'
miRNA:   3'- -GCGaCCGu-UGGGACCGG-----------CAGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 28288 0.66 0.257927
Target:  5'- cCGCgGGCAugggccagguacGCCCgGGCCGaggcggcggguUCCuugucggUGGCCg -3'
miRNA:   3'- -GCGaCCGU------------UGGGaCCGGC-----------AGG-------ACCGG- -5'
12032 3' -61.8 NC_003278.1 + 27784 0.67 0.233368
Target:  5'- gGCUGGuCAGCCaguacgaaGCCG-CCaUGGCCg -3'
miRNA:   3'- gCGACC-GUUGGgac-----CGGCaGG-ACCGG- -5'
12032 3' -61.8 NC_003278.1 + 23076 0.66 0.29318
Target:  5'- uGCaGGUAGCggugCUGGUCGccaUCCUGGCg -3'
miRNA:   3'- gCGaCCGUUGg---GACCGGC---AGGACCGg -5'
12032 3' -61.8 NC_003278.1 + 23016 0.68 0.20479
Target:  5'- cCGCUGGCAGUCUU-GCCG-CCaccGGCCg -3'
miRNA:   3'- -GCGACCGUUGGGAcCGGCaGGa--CCGG- -5'
12032 3' -61.8 NC_003278.1 + 22828 0.73 0.087384
Target:  5'- gCGCUGGCGGgCCU-GCCGaUCCUgcagcuggaccaGGCCa -3'
miRNA:   3'- -GCGACCGUUgGGAcCGGC-AGGA------------CCGG- -5'
12032 3' -61.8 NC_003278.1 + 22119 0.68 0.20479
Target:  5'- gGCagaUGGCuGACaCCgGGUCGgCCUGGCCc -3'
miRNA:   3'- gCG---ACCG-UUG-GGaCCGGCaGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 21696 0.68 0.21584
Target:  5'- gCGCcGGCGcucuuGCCCaGGUCGcCCagcaUGGCCa -3'
miRNA:   3'- -GCGaCCGU-----UGGGaCCGGCaGG----ACCGG- -5'
12032 3' -61.8 NC_003278.1 + 21623 0.69 0.184158
Target:  5'- uGCUGGCcAUgCUGGgCGaCCUGGgCa -3'
miRNA:   3'- gCGACCGuUGgGACCgGCaGGACCgG- -5'
12032 3' -61.8 NC_003278.1 + 21532 0.72 0.10348
Target:  5'- aGCgGGCcGgCCUGGCCGgcgCCgaGGCCc -3'
miRNA:   3'- gCGaCCGuUgGGACCGGCa--GGa-CCGG- -5'
12032 3' -61.8 NC_003278.1 + 21523 0.66 0.300519
Target:  5'- gGcCUGGuCAGCgCgGGCCGUCa-GGCUg -3'
miRNA:   3'- gC-GACC-GUUGgGaCCGGCAGgaCCGG- -5'
12032 3' -61.8 NC_003278.1 + 21439 0.72 0.097827
Target:  5'- gGCgGGUucACCaUGGCCGgCCUGGCCc -3'
miRNA:   3'- gCGaCCGu-UGGgACCGGCaGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 21398 0.66 0.29904
Target:  5'- gCGCUGGaCGgcgcgcuugaucuGCCCUaagccggcgagcaGGCCGUUCaccaGGCCc -3'
miRNA:   3'- -GCGACC-GU-------------UGGGA-------------CCGGCAGGa---CCGG- -5'
12032 3' -61.8 NC_003278.1 + 21022 0.71 0.122336
Target:  5'- gGcCUGGCcgccAACCC-GGUgGUCCUGGCa -3'
miRNA:   3'- gC-GACCG----UUGGGaCCGgCAGGACCGg -5'
12032 3' -61.8 NC_003278.1 + 20823 0.69 0.179295
Target:  5'- cCGUUGGCAGCCUUGccaucacccucGCCGgcaUUCUcGGCCc -3'
miRNA:   3'- -GCGACCGUUGGGAC-----------CGGC---AGGA-CCGG- -5'
12032 3' -61.8 NC_003278.1 + 20426 0.67 0.239472
Target:  5'- cCGUUGGCAuCCUUGGuCUGgacgcccagCUUGGCUa -3'
miRNA:   3'- -GCGACCGUuGGGACC-GGCa--------GGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 20297 0.66 0.258584
Target:  5'- gCGgUGGUgaccgucuccaGGCUCUGGCCGUaCUcgcGGCCg -3'
miRNA:   3'- -GCgACCG-----------UUGGGACCGGCAgGA---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.