Results 1 - 20 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 21398 | 0.66 | 0.29904 |
Target: 5'- gCGCUGGaCGgcgcgcuugaucuGCCCUaagccggcgagcaGGCCGUUCaccaGGCCc -3' miRNA: 3'- -GCGACC-GU-------------UGGGA-------------CCGGCAGGa---CCGG- -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 14945 | 0.71 | 0.129302 |
Target: 5'- gGCUGGCAguggcugcguuGCCCguaaucgaGGCCGguaguagCCcGGCCg -3' miRNA: 3'- gCGACCGU-----------UGGGa-------CCGGCa------GGaCCGG- -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 29796 | 0.73 | 0.084944 |
Target: 5'- gCGCaGGCccGCCUUGGUCaucuucgacggGUCCUGGCCu -3' miRNA: 3'- -GCGaCCGu-UGGGACCGG-----------CAGGACCGG- -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 32813 | 0.74 | 0.071616 |
Target: 5'- cCGCgacaGCAaaugcACCCUGGCCGguaguaCUGGCCg -3' miRNA: 3'- -GCGac--CGU-----UGGGACCGGCag----GACCGG- -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 28288 | 0.66 | 0.257927 |
Target: 5'- cCGCgGGCAugggccagguacGCCCgGGCCGaggcggcggguUCCuugucggUGGCCg -3' miRNA: 3'- -GCGaCCGU------------UGGGaCCGGC-----------AGG-------ACCGG- -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 4194 | 0.67 | 0.245078 |
Target: 5'- gGCUGGCGugUCUGcgacaucGCCGaccaCCUGGgCg -3' miRNA: 3'- gCGACCGUugGGAC-------CGGCa---GGACCgG- -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 9550 | 0.67 | 0.235794 |
Target: 5'- uCGCUGGCuuuccucgccaacucGGCCUgGGCCaGgcgggCCUGcGCCa -3' miRNA: 3'- -GCGACCG---------------UUGGGaCCGG-Ca----GGAC-CGG- -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 21696 | 0.68 | 0.21584 |
Target: 5'- gCGCcGGCGcucuuGCCCaGGUCGcCCagcaUGGCCa -3' miRNA: 3'- -GCGaCCGU-----UGGGaCCGGCaGG----ACCGG- -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 12986 | 0.69 | 0.174546 |
Target: 5'- aGCUGGuCGaggucagcGCCCUGGgCG--CUGGCCa -3' miRNA: 3'- gCGACC-GU--------UGGGACCgGCagGACCGG- -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 12641 | 0.71 | 0.129302 |
Target: 5'- gGgUGGCGucaaucucaugaGCaCCUGGCCGgccaggUUCUGGCCg -3' miRNA: 3'- gCgACCGU------------UG-GGACCGGC------AGGACCGG- -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 9610 | 0.7 | 0.140439 |
Target: 5'- uCGCgggaaagGGCGGCCUcgagGGCCGUgauggugccggCCUGGCg -3' miRNA: 3'- -GCGa------CCGUUGGGa---CCGGCA-----------GGACCGg -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 31575 | 0.68 | 0.199452 |
Target: 5'- aGCUGGCccacucgacAGCCUUGGCC-UgUUGGCg -3' miRNA: 3'- gCGACCG---------UUGGGACCGGcAgGACCGg -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 23076 | 0.66 | 0.29318 |
Target: 5'- uGCaGGUAGCggugCUGGUCGccaUCCUGGCg -3' miRNA: 3'- gCGaCCGUUGg---GACCGGC---AGGACCGg -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 8723 | 0.71 | 0.13292 |
Target: 5'- uCGgUGGCGGCgCCgaagUGGCCGUCCucguagagguUGGCg -3' miRNA: 3'- -GCgACCGUUG-GG----ACCGGCAGG----------ACCGg -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 15519 | 0.66 | 0.258584 |
Target: 5'- aCGCUGGUAugcacuGCCgUGGCCaGUCCcuGCg -3' miRNA: 3'- -GCGACCGU------UGGgACCGG-CAGGacCGg -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 23016 | 0.68 | 0.20479 |
Target: 5'- cCGCUGGCAGUCUU-GCCG-CCaccGGCCg -3' miRNA: 3'- -GCGACCGUUGGGAcCGGCaGGa--CCGG- -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 14642 | 0.71 | 0.129302 |
Target: 5'- cCGC-GGCAACCUUcGCCGUCCccaguccugggUGGCg -3' miRNA: 3'- -GCGaCCGUUGGGAcCGGCAGG-----------ACCGg -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 21532 | 0.72 | 0.10348 |
Target: 5'- aGCgGGCcGgCCUGGCCGgcgCCgaGGCCc -3' miRNA: 3'- gCGaCCGuUgGGACCGGCa--GGa-CCGG- -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 20297 | 0.66 | 0.258584 |
Target: 5'- gCGgUGGUgaccgucuccaGGCUCUGGCCGUaCUcgcGGCCg -3' miRNA: 3'- -GCgACCG-----------UUGGGACCGGCAgGA---CCGG- -5' |
|||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 20426 | 0.67 | 0.239472 |
Target: 5'- cCGUUGGCAuCCUUGGuCUGgacgcccagCUUGGCUa -3' miRNA: 3'- -GCGACCGUuGGGACC-GGCa--------GGACCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home