Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12102 | 5' | -60.3 | NC_003309.1 | + | 10569 | 0.68 | 0.348016 |
Target: 5'- gCCGCCGcCUCGAcggcACGCGCuuCGGcaagcuUCGCu -3' miRNA: 3'- aGGCGGUcGAGCU----UGCGCG--GCC------AGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 11988 | 0.68 | 0.34006 |
Target: 5'- cCCGCgcgcggCAGCcgCGGcGCGCGCCGcGUCGg -3' miRNA: 3'- aGGCG------GUCGa-GCU-UGCGCGGC-CAGCg -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 10873 | 0.68 | 0.332237 |
Target: 5'- uUCCGCUcGCUC--GCGCGCCuGcGUgGCa -3' miRNA: 3'- -AGGCGGuCGAGcuUGCGCGG-C-CAgCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 5173 | 0.68 | 0.356104 |
Target: 5'- aUCGCCAGuUUCGAggcgagcuGCGCGUCGccgCGCg -3' miRNA: 3'- aGGCGGUC-GAGCU--------UGCGCGGCca-GCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 513 | 0.67 | 0.416327 |
Target: 5'- cUCGCCGGgUCGAGCcccagcauuGCGCCGaaGcCGCc -3' miRNA: 3'- aGGCGGUCgAGCUUG---------CGCGGC--CaGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 11792 | 0.67 | 0.407348 |
Target: 5'- aUCGCCuuUUCGAgcgacuuguACGCGUCGG-CGCg -3' miRNA: 3'- aGGCGGucGAGCU---------UGCGCGGCCaGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 33335 | 0.67 | 0.425427 |
Target: 5'- gUCCGCCuaccaauuGCUUcgGGGCGuCGCCGGUg-- -3' miRNA: 3'- -AGGCGGu-------CGAG--CUUGC-GCGGCCAgcg -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 27841 | 0.67 | 0.425427 |
Target: 5'- gCCGCCccauucGCcCGuAUGCGagaaCCGGUCGCg -3' miRNA: 3'- aGGCGGu-----CGaGCuUGCGC----GGCCAGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 7239 | 0.67 | 0.415424 |
Target: 5'- aCCGaCAGgUCGAgauacccgcguuuGCGCGCCGGcaguacCGCc -3' miRNA: 3'- aGGCgGUCgAGCU-------------UGCGCGGCCa-----GCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 27752 | 0.67 | 0.416327 |
Target: 5'- gUCGCCAGa-CG-ACGCGCCGcccggCGCa -3' miRNA: 3'- aGGCGGUCgaGCuUGCGCGGCca---GCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 19038 | 0.67 | 0.381152 |
Target: 5'- aUCgGCCGuuGCUgGAucuGCGCGCC-GUCGUc -3' miRNA: 3'- -AGgCGGU--CGAgCU---UGCGCGGcCAGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 46747 | 0.67 | 0.407348 |
Target: 5'- cUUCGCCAGC----GCGCGCCGGa--- -3' miRNA: 3'- -AGGCGGUCGagcuUGCGCGGCCagcg -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 16095 | 0.67 | 0.398491 |
Target: 5'- aUCCGCUucGCUCGGcUGUGCCGa-CGCc -3' miRNA: 3'- -AGGCGGu-CGAGCUuGCGCGGCcaGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 16789 | 0.67 | 0.396734 |
Target: 5'- -gCGCCGGCcguugaacacggCGAACGUgagGCCGccGUCGCg -3' miRNA: 3'- agGCGGUCGa-----------GCUUGCG---CGGC--CAGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 3160 | 0.67 | 0.389758 |
Target: 5'- -aCGCUGGCUUGGuccuugaGCGCCGGg-GCa -3' miRNA: 3'- agGCGGUCGAGCUug-----CGCGGCCagCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 45384 | 0.67 | 0.389758 |
Target: 5'- uUCCGCaaugcGCUCG-ACGUGCuCGGgaaaccggCGCg -3' miRNA: 3'- -AGGCGgu---CGAGCuUGCGCG-GCCa-------GCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 9424 | 0.67 | 0.388892 |
Target: 5'- --aGCCGGCcgUCGAcgagagaccgcgcAUGCGgCGGUCGUa -3' miRNA: 3'- aggCGGUCG--AGCU-------------UGCGCgGCCAGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 18715 | 0.67 | 0.381152 |
Target: 5'- cUCGCCGGCUgCG-GCGCGgauaCGGcCGCc -3' miRNA: 3'- aGGCGGUCGA-GCuUGCGCg---GCCaGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 10360 | 0.67 | 0.410925 |
Target: 5'- gCCGCCucguguuGCUugaucgucuccucgaCGAGCGCucGCCGGgCGCc -3' miRNA: 3'- aGGCGGu------CGA---------------GCUUGCG--CGGCCaGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 22477 | 0.66 | 0.434644 |
Target: 5'- aCCGCCgacgcggcGGCaUCGuGCGCGgCGaUCGCa -3' miRNA: 3'- aGGCGG--------UCG-AGCuUGCGCgGCcAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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