miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12103 5' -61.8 NC_003309.1 + 50022 0.67 0.312428
Target:  5'- uCGUGCgGaCCGCGcucaccacggcAGCGCACuGUGCCc -3'
miRNA:   3'- cGCGCGgC-GGCGC-----------UCGCGUG-CAUGGu -5'
12103 5' -61.8 NC_003309.1 + 47964 0.66 0.384105
Target:  5'- gGCGCGCCaGCuCGCGcucGGCGaagcuGCG-ACCGa -3'
miRNA:   3'- -CGCGCGG-CG-GCGC---UCGCg----UGCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 46962 0.69 0.257633
Target:  5'- uGCGUGCCGUCGuCGuGCgaaugguccGCAaGUGCCAg -3'
miRNA:   3'- -CGCGCGGCGGC-GCuCG---------CGUgCAUGGU- -5'
12103 5' -61.8 NC_003309.1 + 46659 0.67 0.342978
Target:  5'- cCGgGCCGgCGCGuaauGCGCAgCGcACCGg -3'
miRNA:   3'- cGCgCGGCgGCGCu---CGCGU-GCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 46327 0.69 0.251365
Target:  5'- cGCGUGCCGCCGUaccGCcgaGCACG-GCCu -3'
miRNA:   3'- -CGCGCGGCGGCGcu-CG---CGUGCaUGGu -5'
12103 5' -61.8 NC_003309.1 + 46296 0.79 0.047882
Target:  5'- cUGCGCa--CGCGAGCGCGCGUGCCc -3'
miRNA:   3'- cGCGCGgcgGCGCUCGCGUGCAUGGu -5'
12103 5' -61.8 NC_003309.1 + 45257 0.66 0.366439
Target:  5'- aUGCcgGCCGCCGCGuGCGCcucgaauacgucgGCGgcacuCCAg -3'
miRNA:   3'- cGCG--CGGCGGCGCuCGCG-------------UGCau---GGU- -5'
12103 5' -61.8 NC_003309.1 + 44924 0.66 0.375623
Target:  5'- cGUGCgGCCGCCuCGGGCGUccaGCgGUACa- -3'
miRNA:   3'- -CGCG-CGGCGGcGCUCGCG---UG-CAUGgu -5'
12103 5' -61.8 NC_003309.1 + 44177 0.75 0.095501
Target:  5'- gGCGCGCUGCCGCucGGCGUACGcgACgAg -3'
miRNA:   3'- -CGCGCGGCGGCGc-UCGCGUGCa-UGgU- -5'
12103 5' -61.8 NC_003309.1 + 43708 0.68 0.297945
Target:  5'- aGCGUGCCaUCGuCGgcuagcAGCGCGCGcGCCAg -3'
miRNA:   3'- -CGCGCGGcGGC-GC------UCGCGUGCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 43442 0.7 0.221336
Target:  5'- cGCGCaGCCgcGCCGCGAGauugaacagcaccUGUGCGUGCUg -3'
miRNA:   3'- -CGCG-CGG--CGGCGCUC-------------GCGUGCAUGGu -5'
12103 5' -61.8 NC_003309.1 + 39621 0.68 0.270552
Target:  5'- aCGCGCUGCCaagcauGCGAGCGUGC-UGCg- -3'
miRNA:   3'- cGCGCGGCGG------CGCUCGCGUGcAUGgu -5'
12103 5' -61.8 NC_003309.1 + 34871 0.66 0.410303
Target:  5'- -aGCGCCGCCaacGUGAacgaGCACGUcaucACCGa -3'
miRNA:   3'- cgCGCGGCGG---CGCUcg--CGUGCA----UGGU- -5'
12103 5' -61.8 NC_003309.1 + 32968 0.71 0.190464
Target:  5'- cGCGCGCUGaggCGCGAGaGCGCGacgACCc -3'
miRNA:   3'- -CGCGCGGCg--GCGCUCgCGUGCa--UGGu -5'
12103 5' -61.8 NC_003309.1 + 32740 0.7 0.227543
Target:  5'- uGCGCGCUGUCGCcuacGAGCuGCGCaUGCUc -3'
miRNA:   3'- -CGCGCGGCGGCG----CUCG-CGUGcAUGGu -5'
12103 5' -61.8 NC_003309.1 + 32005 0.7 0.227543
Target:  5'- gGCGCaCCGCgGCGu-CGCACGUcaGCCGc -3'
miRNA:   3'- -CGCGcGGCGgCGCucGCGUGCA--UGGU- -5'
12103 5' -61.8 NC_003309.1 + 31971 0.69 0.264029
Target:  5'- gGCGCaaGCCGCuCGCGuggaacgcAGCGCACGaACa- -3'
miRNA:   3'- -CGCG--CGGCG-GCGC--------UCGCGUGCaUGgu -5'
12103 5' -61.8 NC_003309.1 + 31411 0.66 0.384105
Target:  5'- aGUGCGCaGCCGCcGGCGUGcCGUuCCu -3'
miRNA:   3'- -CGCGCGgCGGCGcUCGCGU-GCAuGGu -5'
12103 5' -61.8 NC_003309.1 + 27741 0.7 0.227543
Target:  5'- aCGCGCCGCC-CG-GCGCAUc-GCCGa -3'
miRNA:   3'- cGCGCGGCGGcGCuCGCGUGcaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 27180 0.66 0.401448
Target:  5'- cGCGCGuguuguagaCCGgCGCGccGGCGUugacCGUGCCGc -3'
miRNA:   3'- -CGCGC---------GGCgGCGC--UCGCGu---GCAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.