miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12105 5' -61.7 NC_003309.1 + 12103 0.66 0.396424
Target:  5'- cGCUUuccagcgagugaACGCcacuGCCCUucGCUACGCgGGCc -3'
miRNA:   3'- -CGAA------------UGCG----CGGGGucCGGUGCGgCCG- -5'
12105 5' -61.7 NC_003309.1 + 17599 0.66 0.396424
Target:  5'- ---gACGUGUCCUgacGCUguaGCGCCGGCa -3'
miRNA:   3'- cgaaUGCGCGGGGuc-CGG---UGCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 5068 0.66 0.387745
Target:  5'- uGCacggGCGCGgCggCCGGuGCCGCGaCGGCg -3'
miRNA:   3'- -CGaa--UGCGCgG--GGUC-CGGUGCgGCCG- -5'
12105 5' -61.7 NC_003309.1 + 14164 0.66 0.387745
Target:  5'- aGCUUGcCGCcgacgaccucGUCCCAcaucaucuuGCCGCGCuCGGCg -3'
miRNA:   3'- -CGAAU-GCG----------CGGGGUc--------CGGUGCG-GCCG- -5'
12105 5' -61.7 NC_003309.1 + 36443 0.66 0.379191
Target:  5'- ---aGCGCGUCa-AGGCCGCGCU-GCa -3'
miRNA:   3'- cgaaUGCGCGGggUCCGGUGCGGcCG- -5'
12105 5' -61.7 NC_003309.1 + 1293 0.66 0.379191
Target:  5'- gGCUgucgACGCGCgCCCAuGCCA-GUCaGCa -3'
miRNA:   3'- -CGAa---UGCGCG-GGGUcCGGUgCGGcCG- -5'
12105 5' -61.7 NC_003309.1 + 7767 0.66 0.379191
Target:  5'- --aUACG-GCgCCGGcGCCuuCGCCGGUg -3'
miRNA:   3'- cgaAUGCgCGgGGUC-CGGu-GCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 46862 0.66 0.370764
Target:  5'- cGCUcaUAgGCuCCUCAGuGCC-CGCaCGGCa -3'
miRNA:   3'- -CGA--AUgCGcGGGGUC-CGGuGCG-GCCG- -5'
12105 5' -61.7 NC_003309.1 + 5771 0.66 0.362467
Target:  5'- aGCggaACGUGCgCgGGGCCAUgauccaGCCGGg -3'
miRNA:   3'- -CGaa-UGCGCGgGgUCCGGUG------CGGCCg -5'
12105 5' -61.7 NC_003309.1 + 9492 0.67 0.354299
Target:  5'- cGCUUGCgGCGUUCgAGGCaaACGCC-GCa -3'
miRNA:   3'- -CGAAUG-CGCGGGgUCCGg-UGCGGcCG- -5'
12105 5' -61.7 NC_003309.1 + 44885 0.67 0.354299
Target:  5'- cGCUUGC-CGUacacggcugaCUCAGGUU-CGCCGGCg -3'
miRNA:   3'- -CGAAUGcGCG----------GGGUCCGGuGCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 53262 0.67 0.346262
Target:  5'- cGCUcGCGCGCCgUCuucGCCGCGUgacagucaCGGCa -3'
miRNA:   3'- -CGAaUGCGCGG-GGuc-CGGUGCG--------GCCG- -5'
12105 5' -61.7 NC_003309.1 + 16962 0.67 0.315433
Target:  5'- aGCg-AUGCGCCCCAcGGCUGCGCg--- -3'
miRNA:   3'- -CGaaUGCGCGGGGU-CCGGUGCGgccg -5'
12105 5' -61.7 NC_003309.1 + 7393 0.68 0.303695
Target:  5'- cGCUUACGCGCCUCgucacGGaucaccuucgcaccaGCCAgCGUCGcGCg -3'
miRNA:   3'- -CGAAUGCGCGGGG-----UC---------------CGGU-GCGGC-CG- -5'
12105 5' -61.7 NC_003309.1 + 47973 0.68 0.300814
Target:  5'- uGCccgUGCgGCGCgCCAGcUCGCGCuCGGCg -3'
miRNA:   3'- -CGa--AUG-CGCGgGGUCcGGUGCG-GCCG- -5'
12105 5' -61.7 NC_003309.1 + 44446 0.68 0.279874
Target:  5'- ---gACGuCGCCC--GGCCGacUGCCGGCg -3'
miRNA:   3'- cgaaUGC-GCGGGguCCGGU--GCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 6509 0.68 0.279874
Target:  5'- cGCUUGcCGCGCgCCCGGGaUCACGaCGcGUu -3'
miRNA:   3'- -CGAAU-GCGCG-GGGUCC-GGUGCgGC-CG- -5'
12105 5' -61.7 NC_003309.1 + 22388 0.68 0.273157
Target:  5'- cGC-UGCGCGUcgaacgCCCGcgcGGCCugcuCGUCGGCa -3'
miRNA:   3'- -CGaAUGCGCG------GGGU---CCGGu---GCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 48651 0.68 0.273157
Target:  5'- uGCUUcaaaAUGCGCUCCuguGGCgAuucCGUCGGCg -3'
miRNA:   3'- -CGAA----UGCGCGGGGu--CCGgU---GCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 37631 0.68 0.273157
Target:  5'- gGC-UGCGauaaCGUCCCGgccGGCUACGUCGGUg -3'
miRNA:   3'- -CGaAUGC----GCGGGGU---CCGGUGCGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.