miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12127 3' -60.5 NC_003309.1 + 22391 0.66 0.458253
Target:  5'- uGCCG-CuGCGCGUcgaacgcccGCGCgGCCUgcUCGUc -3'
miRNA:   3'- -UGGCuGuCGCGCG---------CGUGgCGGA--AGCG- -5'
12127 3' -60.5 NC_003309.1 + 10501 0.66 0.448703
Target:  5'- cGCCGACugcaucgcgaGGCuuuCGCGCAUCGCg--CGCa -3'
miRNA:   3'- -UGGCUG----------UCGc--GCGCGUGGCGgaaGCG- -5'
12127 3' -60.5 NC_003309.1 + 26485 0.66 0.448703
Target:  5'- gGCuUGGCucGCGCGaacggcuGCGCCGCCUUCcCg -3'
miRNA:   3'- -UG-GCUGu-CGCGCg------CGUGGCGGAAGcG- -5'
12127 3' -60.5 NC_003309.1 + 27760 0.66 0.439264
Target:  5'- cGCUGGgAGuCGCcagacgaCGCGCCGCCcggCGCa -3'
miRNA:   3'- -UGGCUgUC-GCGc------GCGUGGCGGaa-GCG- -5'
12127 3' -60.5 NC_003309.1 + 22438 0.66 0.438326
Target:  5'- uGCCGGCgucgAGCGCgGCGCGCgagaucuUGCCcaaCGCu -3'
miRNA:   3'- -UGGCUG----UCGCG-CGCGUG-------GCGGaa-GCG- -5'
12127 3' -60.5 NC_003309.1 + 3109 0.66 0.433655
Target:  5'- cCCGACAGUGC-CGUGCCguucaugaacgacuuGCCggCGUa -3'
miRNA:   3'- uGGCUGUCGCGcGCGUGG---------------CGGaaGCG- -5'
12127 3' -60.5 NC_003309.1 + 46337 0.66 0.427164
Target:  5'- cGCgGACGuacGCGUGCcgccguaccgccgaGCACgGCCUUCuGCg -3'
miRNA:   3'- -UGgCUGU---CGCGCG--------------CGUGgCGGAAG-CG- -5'
12127 3' -60.5 NC_003309.1 + 46973 0.66 0.420731
Target:  5'- uCgGAUAGaUGUGCGUGCCGUCgUCGUg -3'
miRNA:   3'- uGgCUGUC-GCGCGCGUGGCGGaAGCG- -5'
12127 3' -60.5 NC_003309.1 + 10561 0.66 0.420731
Target:  5'- cUCGACGGCaCGCGCuuCgGCaagCUUCGCu -3'
miRNA:   3'- uGGCUGUCGcGCGCGu-GgCG---GAAGCG- -5'
12127 3' -60.5 NC_003309.1 + 49610 0.66 0.420731
Target:  5'- aACCGAUuccccguaAGCGCuucauuucucCGCACCGCCgucuUUGCc -3'
miRNA:   3'- -UGGCUG--------UCGCGc---------GCGUGGCGGa---AGCG- -5'
12127 3' -60.5 NC_003309.1 + 22161 0.66 0.420731
Target:  5'- uCCGACucguugaucGCGCgacacGCGCcCCGCCagUCGCc -3'
miRNA:   3'- uGGCUGu--------CGCG-----CGCGuGGCGGa-AGCG- -5'
12127 3' -60.5 NC_003309.1 + 14543 0.66 0.420731
Target:  5'- cACCGACGGCGauuucCugCGCCUgCGUg -3'
miRNA:   3'- -UGGCUGUCGCgcgc-GugGCGGAaGCG- -5'
12127 3' -60.5 NC_003309.1 + 6357 0.66 0.420731
Target:  5'- cGCCG-CGGUGgGCuuGgCGCUUUCGCc -3'
miRNA:   3'- -UGGCuGUCGCgCGcgUgGCGGAAGCG- -5'
12127 3' -60.5 NC_003309.1 + 47492 0.66 0.419817
Target:  5'- --aGGCGGCGCaGCGacaccuuCGCCGCCgggCGUg -3'
miRNA:   3'- uggCUGUCGCG-CGC-------GUGGCGGaa-GCG- -5'
12127 3' -60.5 NC_003309.1 + 19944 0.66 0.417993
Target:  5'- uUCGAC-GCGCGCgaucgcuuccguuuGCACCGCgg-CGCu -3'
miRNA:   3'- uGGCUGuCGCGCG--------------CGUGGCGgaaGCG- -5'
12127 3' -60.5 NC_003309.1 + 49469 0.66 0.417993
Target:  5'- cGCCGAgCAcGCGCGaaugccgauugcgaUGCACguaUGCCUUCGUc -3'
miRNA:   3'- -UGGCU-GU-CGCGC--------------GCGUG---GCGGAAGCG- -5'
12127 3' -60.5 NC_003309.1 + 20032 0.66 0.411644
Target:  5'- -aCGACuuCGCGacgguuuGCACCGCCgcCGCg -3'
miRNA:   3'- ugGCUGucGCGCg------CGUGGCGGaaGCG- -5'
12127 3' -60.5 NC_003309.1 + 18713 0.66 0.410742
Target:  5'- cGCCGGCuGCG-GCGCggauacgGCCGCCgauccgGCg -3'
miRNA:   3'- -UGGCUGuCGCgCGCG-------UGGCGGaag---CG- -5'
12127 3' -60.5 NC_003309.1 + 46170 0.67 0.402679
Target:  5'- cGCCucaACAGCGUcaCGCACCGCCaugcaGCa -3'
miRNA:   3'- -UGGc--UGUCGCGc-GCGUGGCGGaag--CG- -5'
12127 3' -60.5 NC_003309.1 + 22468 0.67 0.39384
Target:  5'- -nCGGCGGCauCGUGCGCgGCgaUCGCa -3'
miRNA:   3'- ugGCUGUCGc-GCGCGUGgCGgaAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.