miRNA display CGI


Results 21 - 28 of 28 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12139 3' -55.2 NC_003309.1 + 39293 0.66 0.680992
Target:  5'- cGGACGAugcguggcaacucgcGCAugcguugcgucgccaGCGCGCAGCCcgcgGAUCa -3'
miRNA:   3'- aUCUGCU---------------CGUug-------------CGCGCGUCGG----UUAG- -5'
12139 3' -55.2 NC_003309.1 + 43695 0.76 0.180691
Target:  5'- -cGGCuAGCAGCGCGCGC-GCCAGaUCg -3'
miRNA:   3'- auCUGcUCGUUGCGCGCGuCGGUU-AG- -5'
12139 3' -55.2 NC_003309.1 + 45322 0.66 0.635015
Target:  5'- -cGGCGuugauGCAugGCaUGCAGCCAAc- -3'
miRNA:   3'- auCUGCu----CGUugCGcGCGUCGGUUag -5'
12139 3' -55.2 NC_003309.1 + 47011 0.68 0.545773
Target:  5'- -cGGCGAuuGGCGCGUcuucGCAGCCAacuuGUCg -3'
miRNA:   3'- auCUGCUcgUUGCGCG----CGUCGGU----UAG- -5'
12139 3' -55.2 NC_003309.1 + 47395 0.71 0.348246
Target:  5'- -cGACGGGCAACaGuCGgGCAGCuCGAUUg -3'
miRNA:   3'- auCUGCUCGUUG-C-GCgCGUCG-GUUAG- -5'
12139 3' -55.2 NC_003309.1 + 47776 0.67 0.612523
Target:  5'- --aGCGGGCAGCcuCGCGCAGCauuUCc -3'
miRNA:   3'- aucUGCUCGUUGc-GCGCGUCGguuAG- -5'
12139 3' -55.2 NC_003309.1 + 49469 0.69 0.46092
Target:  5'- -cGcCGAGC-ACGCGCGaauGCCGAUUg -3'
miRNA:   3'- auCuGCUCGuUGCGCGCgu-CGGUUAG- -5'
12139 3' -55.2 NC_003309.1 + 53305 0.74 0.249322
Target:  5'- cGGGCGGGCAACGaCGgGCGgGCCAccaccacGUCa -3'
miRNA:   3'- aUCUGCUCGUUGC-GCgCGU-CGGU-------UAG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.