Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12139 | 3' | -55.2 | NC_003309.1 | + | 18553 | 0.7 | 0.42117 |
Target: 5'- gAGACGGuGCGccugcgccuGCGaCGUGCAGCCGAa- -3' miRNA: 3'- aUCUGCU-CGU---------UGC-GCGCGUCGGUUag -5' |
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12139 | 3' | -55.2 | NC_003309.1 | + | 11206 | 0.71 | 0.365609 |
Target: 5'- -cGACGccuccuGCuuCGUGCGCAGCCGcUCg -3' miRNA: 3'- auCUGCu-----CGuuGCGCGCGUCGGUuAG- -5' |
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12139 | 3' | -55.2 | NC_003309.1 | + | 10645 | 0.66 | 0.668704 |
Target: 5'- cGGcAUGcccGCGAUGCGCGC-GCCGAUUu -3' miRNA: 3'- aUC-UGCu--CGUUGCGCGCGuCGGUUAG- -5' |
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12139 | 3' | -55.2 | NC_003309.1 | + | 6797 | 0.66 | 0.668704 |
Target: 5'- -cGACGGGUAuCGCGCaaGGUCAAUg -3' miRNA: 3'- auCUGCUCGUuGCGCGcgUCGGUUAg -5' |
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12139 | 3' | -55.2 | NC_003309.1 | + | 6148 | 0.68 | 0.513238 |
Target: 5'- -uGACGGGCcGCGCGauuGCAGCU--UCg -3' miRNA: 3'- auCUGCUCGuUGCGCg--CGUCGGuuAG- -5' |
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12139 | 3' | -55.2 | NC_003309.1 | + | 5332 | 0.72 | 0.30746 |
Target: 5'- gAGAgCG-GCAGCGUGCGCGcGCCGAg- -3' miRNA: 3'- aUCU-GCuCGUUGCGCGCGU-CGGUUag -5' |
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12139 | 3' | -55.2 | NC_003309.1 | + | 5161 | 0.72 | 0.339788 |
Target: 5'- gAGGCGAGC--UGCGCGUcGCCGcgCg -3' miRNA: 3'- aUCUGCUCGuuGCGCGCGuCGGUuaG- -5' |
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12139 | 3' | -55.2 | NC_003309.1 | + | 1300 | 0.73 | 0.291451 |
Target: 5'- --cAUGAGCGgcugucgACGCGCGCccauGCCAGUCa -3' miRNA: 3'- aucUGCUCGU-------UGCGCGCGu---CGGUUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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