miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12157 5' -52.5 NC_003309.1 + 43792 0.66 0.894204
Target:  5'- gCGCGAgCGCGCcCGGCA---AACGu -3'
miRNA:   3'- gGCGCUaGCGUGuGCCGUaugUUGCc -5'
12157 5' -52.5 NC_003309.1 + 5381 0.66 0.894204
Target:  5'- gCCGaCGAUCGCGCcacccuucaGGCGcGgGAUGGu -3'
miRNA:   3'- -GGC-GCUAGCGUGug-------CCGUaUgUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 26345 0.66 0.894204
Target:  5'- -aGCGAcgCGCGCACG----ACGACGGc -3'
miRNA:   3'- ggCGCUa-GCGUGUGCcguaUGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 9702 0.66 0.886944
Target:  5'- gCCGUGuGUCGCGCGCGauGC--GCAGCa- -3'
miRNA:   3'- -GGCGC-UAGCGUGUGC--CGuaUGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 12629 0.66 0.886944
Target:  5'- gCCGCGcUCGCGCGCGaccuGCuccGCcuCGGc -3'
miRNA:   3'- -GGCGCuAGCGUGUGC----CGua-UGuuGCC- -5'
12157 5' -52.5 NC_003309.1 + 45541 0.66 0.879422
Target:  5'- uCCGCGAgaaggUCGUAUugACGGCc-GCcGCGGc -3'
miRNA:   3'- -GGCGCU-----AGCGUG--UGCCGuaUGuUGCC- -5'
12157 5' -52.5 NC_003309.1 + 43276 0.66 0.879422
Target:  5'- gCCGCG-UCGCAgcacucaACGGCGcucgGCAACu- -3'
miRNA:   3'- -GGCGCuAGCGUg------UGCCGUa---UGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 12790 0.66 0.863617
Target:  5'- gCCGCGAaCGaCACGagugcauccuCGGCAUu--GCGGa -3'
miRNA:   3'- -GGCGCUaGC-GUGU----------GCCGUAuguUGCC- -5'
12157 5' -52.5 NC_003309.1 + 31484 0.66 0.863617
Target:  5'- -gGUGAUCGCcgGCGGCGaa-AGCGGc -3'
miRNA:   3'- ggCGCUAGCGugUGCCGUaugUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 46581 0.66 0.863617
Target:  5'- cUCGCGAauucCGCA-AUGGCGUcgauCGACGGa -3'
miRNA:   3'- -GGCGCUa---GCGUgUGCCGUAu---GUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 20060 0.66 0.862801
Target:  5'- gCCGCGAcaCGCcCGuucagguCGGCGUACGACu- -3'
miRNA:   3'- -GGCGCUa-GCGuGU-------GCCGUAUGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 18478 0.67 0.855347
Target:  5'- cCCGUcGUCGUccuGCACGGCuucgACAGCc- -3'
miRNA:   3'- -GGCGcUAGCG---UGUGCCGua--UGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 13635 0.67 0.855347
Target:  5'- uCCGCGggCGCGaagcgGCGGCGUccaguagaACGACu- -3'
miRNA:   3'- -GGCGCuaGCGUg----UGCCGUA--------UGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 24337 0.67 0.85282
Target:  5'- aCGCGAccuuucauguauucUCGCGCACcGUAcACGGCGa -3'
miRNA:   3'- gGCGCU--------------AGCGUGUGcCGUaUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 7222 0.67 0.846842
Target:  5'- cCCGCGuUUGCGCGCcGGCAgUACcGCc- -3'
miRNA:   3'- -GGCGCuAGCGUGUG-CCGU-AUGuUGcc -5'
12157 5' -52.5 NC_003309.1 + 21773 0.67 0.846842
Target:  5'- aUCGUGAugcUCcaguuCACGCaGGCGUGCAGCGa -3'
miRNA:   3'- -GGCGCU---AGc----GUGUG-CCGUAUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 28812 0.67 0.84163
Target:  5'- cCCGCGGgauagagcugcaacaUCGCGCgaGCGGCuu-CAGCa- -3'
miRNA:   3'- -GGCGCU---------------AGCGUG--UGCCGuauGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 30902 0.67 0.838111
Target:  5'- uCUGCGAaagGCu--CGGCGUACAACGu -3'
miRNA:   3'- -GGCGCUag-CGuguGCCGUAUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 32930 0.67 0.838111
Target:  5'- aUCGCGGcaaGCAacaACGGCuAUGCGGcCGGa -3'
miRNA:   3'- -GGCGCUag-CGUg--UGCCG-UAUGUU-GCC- -5'
12157 5' -52.5 NC_003309.1 + 39245 0.67 0.836339
Target:  5'- cCCGCGGaucagcaUCGCGCACgaaGGUcgACGaagugcucgccgaACGGg -3'
miRNA:   3'- -GGCGCU-------AGCGUGUG---CCGuaUGU-------------UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.