miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12179 3' -57.1 NC_003309.1 + 5323 0.66 0.606104
Target:  5'- aGCGUgCGCGCGCCGagcuugcgaacgaCGgacuucggacGCAGCAGUUc -3'
miRNA:   3'- -CGCA-GUGCGUGGCg------------GUa---------CGUCGUCAG- -5'
12179 3' -57.1 NC_003309.1 + 14819 0.66 0.588603
Target:  5'- aCGUCACGCcCCGCUuaccGC-GCAGcCg -3'
miRNA:   3'- cGCAGUGCGuGGCGGua--CGuCGUCaG- -5'
12179 3' -57.1 NC_003309.1 + 4146 0.66 0.577709
Target:  5'- -gGUCGCGCucCCGCCGuUGCuGUcgauGUCg -3'
miRNA:   3'- cgCAGUGCGu-GGCGGU-ACGuCGu---CAG- -5'
12179 3' -57.1 NC_003309.1 + 48749 0.66 0.56686
Target:  5'- cGCcUCAUGCaACCGUCAUGCAagaGCgaaucaucaGGUCg -3'
miRNA:   3'- -CGcAGUGCG-UGGCGGUACGU---CG---------UCAG- -5'
12179 3' -57.1 NC_003309.1 + 53262 0.66 0.56686
Target:  5'- cGC-UCGCGCGCCGUCuucgccGCGuGaCAGUCa -3'
miRNA:   3'- -CGcAGUGCGUGGCGGua----CGU-C-GUCAG- -5'
12179 3' -57.1 NC_003309.1 + 7808 0.66 0.556064
Target:  5'- aGCGcCAUGUcgaGCgCGCCAUGUAcGCGcGUCa -3'
miRNA:   3'- -CGCaGUGCG---UG-GCGGUACGU-CGU-CAG- -5'
12179 3' -57.1 NC_003309.1 + 46837 0.67 0.53466
Target:  5'- aCGgcaACGCGCCGUCA-GCGuCAGUCu -3'
miRNA:   3'- cGCag-UGCGUGGCGGUaCGUcGUCAG- -5'
12179 3' -57.1 NC_003309.1 + 10424 0.67 0.524067
Target:  5'- cGCGUUuuGCAgcuUCGCCGcaGCAGCAGcUCg -3'
miRNA:   3'- -CGCAGugCGU---GGCGGUa-CGUCGUC-AG- -5'
12179 3' -57.1 NC_003309.1 + 9698 0.67 0.513554
Target:  5'- uGUGUCGCGCGCgaUGC---GCAGCAcGUCg -3'
miRNA:   3'- -CGCAGUGCGUG--GCGguaCGUCGU-CAG- -5'
12179 3' -57.1 NC_003309.1 + 13446 0.67 0.492798
Target:  5'- aGCGUCGuauCGCCGCCGUGCccuuGUAccGUCg -3'
miRNA:   3'- -CGCAGUgc-GUGGCGGUACGu---CGU--CAG- -5'
12179 3' -57.1 NC_003309.1 + 11448 0.68 0.472435
Target:  5'- uCGUCGC-CGCCGUCuguUGCggacacgaAGCGGUCa -3'
miRNA:   3'- cGCAGUGcGUGGCGGu--ACG--------UCGUCAG- -5'
12179 3' -57.1 NC_003309.1 + 22321 0.68 0.442714
Target:  5'- cGCaa-GCGCcgGCCGCCAUGCcaAGCAG-Cg -3'
miRNA:   3'- -CGcagUGCG--UGGCGGUACG--UCGUCaG- -5'
12179 3' -57.1 NC_003309.1 + 5568 0.68 0.442714
Target:  5'- uUGUCuuCGCGCgCGCCGaucGCGGCGGUg -3'
miRNA:   3'- cGCAGu-GCGUG-GCGGUa--CGUCGUCAg -5'
12179 3' -57.1 NC_003309.1 + 9514 0.69 0.423497
Target:  5'- aGCG-CGCGCACCGUgAccugcacgcuUGCGGCGuUCg -3'
miRNA:   3'- -CGCaGUGCGUGGCGgU----------ACGUCGUcAG- -5'
12179 3' -57.1 NC_003309.1 + 19497 0.69 0.414078
Target:  5'- cGCGUCGuCGCGauUCGgCGUGCGGCuGUa -3'
miRNA:   3'- -CGCAGU-GCGU--GGCgGUACGUCGuCAg -5'
12179 3' -57.1 NC_003309.1 + 5150 0.69 0.414078
Target:  5'- cGCGUCgccGCGCGCCGCCGcgaGC-GCAcGUa -3'
miRNA:   3'- -CGCAG---UGCGUGGCGGUa--CGuCGU-CAg -5'
12179 3' -57.1 NC_003309.1 + 22583 0.69 0.404789
Target:  5'- aGCGaCGCGCAgCCGCUcaGUGcCAGCGG-Ca -3'
miRNA:   3'- -CGCaGUGCGU-GGCGG--UAC-GUCGUCaG- -5'
12179 3' -57.1 NC_003309.1 + 16276 0.69 0.395632
Target:  5'- -aGUCGCGCACgaUCGcGUAGCAGUCg -3'
miRNA:   3'- cgCAGUGCGUGgcGGUaCGUCGUCAG- -5'
12179 3' -57.1 NC_003309.1 + 19774 0.69 0.38661
Target:  5'- uCGUCGCGuCGCCgGCCAU-CGGCGGg- -3'
miRNA:   3'- cGCAGUGC-GUGG-CGGUAcGUCGUCag -5'
12179 3' -57.1 NC_003309.1 + 51056 0.7 0.360371
Target:  5'- gGCGUCaACGC-CCGCCAgaUGCcuGCGGa- -3'
miRNA:   3'- -CGCAG-UGCGuGGCGGU--ACGu-CGUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.