Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 12764 | 0.72 | 0.415855 |
Target: 5'- gGCAUuGCGgAACGAACUcGUCaGCGCCu -3' miRNA: 3'- -CGUGcCGCgUUGCUUGGaCAG-CGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 14571 | 0.68 | 0.667257 |
Target: 5'- aGCgACGcuuGCGU-AUGAAgcCCUGUUGCACCg -3' miRNA: 3'- -CG-UGC---CGCGuUGCUU--GGACAGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 16203 | 0.67 | 0.678167 |
Target: 5'- gGC-CGGCGCGAacuCGcACCaGUCGUcgacGCCg -3' miRNA: 3'- -CGuGCCGCGUU---GCuUGGaCAGCG----UGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 16298 | 0.66 | 0.742324 |
Target: 5'- aCGCcGCGCucAGCGAgauACCaGUCGCGCa -3' miRNA: 3'- cGUGcCGCG--UUGCU---UGGaCAGCGUGg -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 16775 | 0.7 | 0.505034 |
Target: 5'- aCACGGCG-AACGugagGCCgccGUCGCGCg -3' miRNA: 3'- cGUGCCGCgUUGCu---UGGa--CAGCGUGg -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 16850 | 0.7 | 0.494692 |
Target: 5'- --cCGGaGCAauGCGAAUCUcGUCGCGCCc -3' miRNA: 3'- cguGCCgCGU--UGCUUGGA-CAGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 17293 | 0.66 | 0.752696 |
Target: 5'- uCGCGcGCGCAAuCGAAUgcagaCUGUCGgGCg -3' miRNA: 3'- cGUGC-CGCGUU-GCUUG-----GACAGCgUGg -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 17779 | 0.67 | 0.710591 |
Target: 5'- aUACGGCGCAcACGGAUCaGccagccguuuuUCGCGCg -3' miRNA: 3'- cGUGCCGCGU-UGCUUGGaC-----------AGCGUGg -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 18465 | 0.68 | 0.667257 |
Target: 5'- uGCACGGCuuCGAC-AGCCUGcUGUACUg -3' miRNA: 3'- -CGUGCCGc-GUUGcUUGGACaGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 19915 | 0.67 | 0.721261 |
Target: 5'- cCGCGGCGCucagcagguuCGAGCUcGaUCGCugCu -3' miRNA: 3'- cGUGCCGCGuu--------GCUUGGaC-AGCGugG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 22228 | 0.69 | 0.60147 |
Target: 5'- aGCGCGGCGUuucACGAGaCCcGgcaGCACUc -3' miRNA: 3'- -CGUGCCGCGu--UGCUU-GGaCag-CGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 22427 | 0.68 | 0.611328 |
Target: 5'- aGCGCGGCGCG-CGAgaucuuGCCcaacgcuucggcaUGcCGCugCg -3' miRNA: 3'- -CGUGCCGCGUuGCU------UGG-------------ACaGCGugG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 27165 | 0.66 | 0.77306 |
Target: 5'- --cCGGCGCGccgGCGuuGACCgUGcCGCGCUg -3' miRNA: 3'- cguGCCGCGU---UGC--UUGG-ACaGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 27207 | 0.66 | 0.731842 |
Target: 5'- -aGCGGCGCAGCcacgcuGCCguugauUCGCGCg -3' miRNA: 3'- cgUGCCGCGUUGcu----UGGac----AGCGUGg -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 27266 | 0.67 | 0.678167 |
Target: 5'- aCGCGGCGUuuUGAgaaucgcaGCCU-UCGCACUg -3' miRNA: 3'- cGUGCCGCGuuGCU--------UGGAcAGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 27336 | 0.75 | 0.276518 |
Target: 5'- -aGCGGCGCGGCGAACUgccGaUGCAUCa -3' miRNA: 3'- cgUGCCGCGUUGCUUGGa--CaGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 27477 | 0.69 | 0.579649 |
Target: 5'- aGCGCGGCGaagaGGCGu-UCUaUCGCAUCa -3' miRNA: 3'- -CGUGCCGCg---UUGCuuGGAcAGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 27926 | 0.66 | 0.762945 |
Target: 5'- gGCAC-GCGCAAUuGAUCcGUCGUugCu -3' miRNA: 3'- -CGUGcCGCGUUGcUUGGaCAGCGugG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 28509 | 0.68 | 0.623395 |
Target: 5'- cGCGCcggaaucaGGCaGCGGCGAcCCg--CGCGCCa -3' miRNA: 3'- -CGUG--------CCG-CGUUGCUuGGacaGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 28840 | 0.71 | 0.484447 |
Target: 5'- uCACGGUGCuGGCGcugcAACCaUGUCGC-CCg -3' miRNA: 3'- cGUGCCGCG-UUGC----UUGG-ACAGCGuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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