Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12324 | 3' | -58.4 | NC_003324.1 | + | 8375 | 0.67 | 0.473083 |
Target: 5'- uGCgGAUGACGCUGGCUgcGACGGCg-- -3' miRNA: 3'- uCG-CUAUUGCGGUCGGa-CUGCCGggu -5' |
|||||||
12324 | 3' | -58.4 | NC_003324.1 | + | 31260 | 0.67 | 0.473083 |
Target: 5'- --gGAUAACcCgGGCCUGAUGGCgCAg -3' miRNA: 3'- ucgCUAUUGcGgUCGGACUGCCGgGU- -5' |
|||||||
12324 | 3' | -58.4 | NC_003324.1 | + | 46989 | 0.67 | 0.483089 |
Target: 5'- cGGCGAUAACGCCccucGGgCUGccuugaaccgcaGCGGCUa- -3' miRNA: 3'- -UCGCUAUUGCGG----UCgGAC------------UGCCGGgu -5' |
|||||||
12324 | 3' | -58.4 | NC_003324.1 | + | 49611 | 0.67 | 0.483089 |
Target: 5'- uGGCGAUAcCGUCAuUCUGGCaGGCgCCAa -3' miRNA: 3'- -UCGCUAUuGCGGUcGGACUG-CCG-GGU- -5' |
|||||||
12324 | 3' | -58.4 | NC_003324.1 | + | 21195 | 0.67 | 0.493196 |
Target: 5'- uGCGcaAGCGCCAGCCcGACGuggaaGCCg- -3' miRNA: 3'- uCGCuaUUGCGGUCGGaCUGC-----CGGgu -5' |
|||||||
12324 | 3' | -58.4 | NC_003324.1 | + | 11619 | 0.66 | 0.503398 |
Target: 5'- cAGCGAUGaacguGCGCUugaacgacggcGGUCUGACGccgaucaacaaGCCCAu -3' miRNA: 3'- -UCGCUAU-----UGCGG-----------UCGGACUGC-----------CGGGU- -5' |
|||||||
12324 | 3' | -58.4 | NC_003324.1 | + | 25794 | 0.66 | 0.510594 |
Target: 5'- uGGCGGUAcCGUCAuagucgagacgcacGCCUG-CGcGCCCGg -3' miRNA: 3'- -UCGCUAUuGCGGU--------------CGGACuGC-CGGGU- -5' |
|||||||
12324 | 3' | -58.4 | NC_003324.1 | + | 35030 | 0.66 | 0.545056 |
Target: 5'- cAGCGGcGGCGgCAGCa--GCGGCCUg -3' miRNA: 3'- -UCGCUaUUGCgGUCGgacUGCCGGGu -5' |
|||||||
12324 | 3' | -58.4 | NC_003324.1 | + | 48842 | 0.66 | 0.555652 |
Target: 5'- gGGCGAccuugAGCGCUucgCUGAUGGCCUg -3' miRNA: 3'- -UCGCUa----UUGCGGucgGACUGCCGGGu -5' |
|||||||
12324 | 3' | -58.4 | NC_003324.1 | + | 17789 | 0.66 | 0.555652 |
Target: 5'- --gGGUAuCGCCAGCCUGAucuuCGGCg-- -3' miRNA: 3'- ucgCUAUuGCGGUCGGACU----GCCGggu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home