Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12324 | 3' | -58.4 | NC_003324.1 | + | 19488 | 0.7 | 0.329515 |
Target: 5'- gGGCGAUAGCGUCGGCgUcGGCGuGCUUc -3' miRNA: 3'- -UCGCUAUUGCGGUCGgA-CUGC-CGGGu -5' |
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12324 | 3' | -58.4 | NC_003324.1 | + | 28829 | 0.69 | 0.348882 |
Target: 5'- uGCGcuUGACGCCAGCCUGuucgagcacgcgcuuGCGaGCCgGa -3' miRNA: 3'- uCGCu-AUUGCGGUCGGAC---------------UGC-CGGgU- -5' |
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12324 | 3' | -58.4 | NC_003324.1 | + | 42191 | 0.68 | 0.434156 |
Target: 5'- cGGCacu-GCGCCGGagUGAuCGGCCCAa -3' miRNA: 3'- -UCGcuauUGCGGUCggACU-GCCGGGU- -5' |
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12324 | 3' | -58.4 | NC_003324.1 | + | 43572 | 0.67 | 0.443716 |
Target: 5'- cGCGc-AACGUCAGCCgauUGAgGGCCUg -3' miRNA: 3'- uCGCuaUUGCGGUCGG---ACUgCCGGGu -5' |
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12324 | 3' | -58.4 | NC_003324.1 | + | 34427 | 0.67 | 0.443716 |
Target: 5'- -uCGGUGAUGUCGGCC-GACGGCaCAu -3' miRNA: 3'- ucGCUAUUGCGGUCGGaCUGCCGgGU- -5' |
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12324 | 3' | -58.4 | NC_003324.1 | + | 14424 | 0.67 | 0.453393 |
Target: 5'- uGGgGAUcACGcCCGGCuCUGGCG-CCCAu -3' miRNA: 3'- -UCgCUAuUGC-GGUCG-GACUGCcGGGU- -5' |
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12324 | 3' | -58.4 | NC_003324.1 | + | 31764 | 0.67 | 0.453393 |
Target: 5'- -cUGggGGCGCCAacGCCUGcCGGCCUc -3' miRNA: 3'- ucGCuaUUGCGGU--CGGACuGCCGGGu -5' |
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12324 | 3' | -58.4 | NC_003324.1 | + | 49611 | 0.67 | 0.483089 |
Target: 5'- uGGCGAUAcCGUCAuUCUGGCaGGCgCCAa -3' miRNA: 3'- -UCGCUAUuGCGGUcGGACUG-CCG-GGU- -5' |
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12324 | 3' | -58.4 | NC_003324.1 | + | 46989 | 0.67 | 0.483089 |
Target: 5'- cGGCGAUAACGCCccucGGgCUGccuugaaccgcaGCGGCUa- -3' miRNA: 3'- -UCGCUAUUGCGG----UCgGAC------------UGCCGGgu -5' |
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12324 | 3' | -58.4 | NC_003324.1 | + | 5890 | 0.75 | 0.15634 |
Target: 5'- uGGgGAUGACgGCCugcGCCuUGAUGGCCCGa -3' miRNA: 3'- -UCgCUAUUG-CGGu--CGG-ACUGCCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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