Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12333 | 5' | -55.7 | NC_003324.1 | + | 16127 | 0.68 | 0.561001 |
Target: 5'- cUGCGcAGGGCgcuucGGUagcGggGGCcgCGCCa -3' miRNA: 3'- aACGC-UUCCGa----CCA---CuaCCGuaGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 48829 | 0.67 | 0.582972 |
Target: 5'- --aUGggGGCgacgaGGUGAUGuccuuCAUCGCCa -3' miRNA: 3'- aacGCuuCCGa----CCACUACc----GUAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 24295 | 0.67 | 0.594024 |
Target: 5'- -gGCGGAGcUUGGcGAaGGCGUCGCg -3' miRNA: 3'- aaCGCUUCcGACCaCUaCCGUAGCGg -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 24377 | 0.67 | 0.601781 |
Target: 5'- cUGCGAuacGGGCUGGccgagaUGGUcgGGCAUgcggauaugcacugCGCCg -3' miRNA: 3'- aACGCU---UCCGACC------ACUA--CCGUA--------------GCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 20582 | 0.67 | 0.616219 |
Target: 5'- -gGCGAgcGGGauccGGUGcuGUGGCgccGUCGCCa -3' miRNA: 3'- aaCGCU--UCCga--CCAC--UACCG---UAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 30340 | 0.66 | 0.624004 |
Target: 5'- cUGCGAu-GCUGcauccuccgucagaGccuUGAUGGCGUCGCCc -3' miRNA: 3'- aACGCUucCGAC--------------C---ACUACCGUAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 15451 | 0.66 | 0.627342 |
Target: 5'- -cGCGAAGGUUGccaggGGCGagGCCa -3' miRNA: 3'- aaCGCUUCCGACcacuaCCGUagCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 233 | 0.66 | 0.660697 |
Target: 5'- --uCGAcuuuaGGGCUGGcGGccGCAUCGCCg -3' miRNA: 3'- aacGCU-----UCCGACCaCUacCGUAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 44904 | 0.74 | 0.242005 |
Target: 5'- -cGCGggGGCUGGauugcucGAUGGCAagcugCGCg -3' miRNA: 3'- aaCGCuuCCGACCa------CUACCGUa----GCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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