miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12335 5' -54.5 NC_003324.1 + 23617 0.66 0.764947
Target:  5'- cCCGCCGCCacGCug--UGGgGCACc- -3'
miRNA:   3'- -GGCGGUGGaaCGuuuaGCCgCGUGua -5'
12335 5' -54.5 NC_003324.1 + 39747 0.66 0.764947
Target:  5'- -gGCgGCCUUGguGucCGGCgGCACGUg -3'
miRNA:   3'- ggCGgUGGAACguUuaGCCG-CGUGUA- -5'
12335 5' -54.5 NC_003324.1 + 21073 0.66 0.762882
Target:  5'- aCGCUGCCUUGUcggccgccgCGGCGCGu-- -3'
miRNA:   3'- gGCGGUGGAACGuuua-----GCCGCGUgua -5'
12335 5' -54.5 NC_003324.1 + 35719 0.66 0.761847
Target:  5'- cCCGUgACCUUGCGGAuacgcuucacgagcUCGuCGCGCu- -3'
miRNA:   3'- -GGCGgUGGAACGUUU--------------AGCcGCGUGua -5'
12335 5' -54.5 NC_003324.1 + 54363 0.66 0.754569
Target:  5'- aCGCagGCCUUccaGCAAcggcUCGGCGCugAUg -3'
miRNA:   3'- gGCGg-UGGAA---CGUUu---AGCCGCGugUA- -5'
12335 5' -54.5 NC_003324.1 + 14060 0.66 0.754569
Target:  5'- gCGCCAUCgcccgauccGCAGAUCGGCaaagcaGCGCu- -3'
miRNA:   3'- gGCGGUGGaa-------CGUUUAGCCG------CGUGua -5'
12335 5' -54.5 NC_003324.1 + 2506 0.66 0.753524
Target:  5'- gCCGCCGgCgucgGCGGcuucaucAUCGGCGUugGc -3'
miRNA:   3'- -GGCGGUgGaa--CGUU-------UAGCCGCGugUa -5'
12335 5' -54.5 NC_003324.1 + 20868 0.66 0.74828
Target:  5'- uCCGCCGCCUcGCcaacguuccggCGGUGgACAa -3'
miRNA:   3'- -GGCGGUGGAaCGuuua-------GCCGCgUGUa -5'
12335 5' -54.5 NC_003324.1 + 10183 0.66 0.744063
Target:  5'- cCCGUCAgCUucggcuagUGCucAUCGGCGC-CAa -3'
miRNA:   3'- -GGCGGUgGA--------ACGuuUAGCCGCGuGUa -5'
12335 5' -54.5 NC_003324.1 + 49720 0.66 0.744063
Target:  5'- cCCGCUGCCcUGCAGGcgggaugguUCagcgGGCGCACc- -3'
miRNA:   3'- -GGCGGUGGaACGUUU---------AG----CCGCGUGua -5'
12335 5' -54.5 NC_003324.1 + 24546 0.66 0.743005
Target:  5'- aCUGUCACCcuccccgagaaugUccaggacgUGCAGGUCGGCGCAa-- -3'
miRNA:   3'- -GGCGGUGG-------------A--------ACGUUUAGCCGCGUgua -5'
12335 5' -54.5 NC_003324.1 + 57200 0.66 0.73344
Target:  5'- gCGCCGugguuCCaugugguaUUGCAAGcUGGCGCACAa -3'
miRNA:   3'- gGCGGU-----GG--------AACGUUUaGCCGCGUGUa -5'
12335 5' -54.5 NC_003324.1 + 48471 0.66 0.73344
Target:  5'- gCCGCaGCCgaGCAGGUaGGCGC-CAa -3'
miRNA:   3'- -GGCGgUGGaaCGUUUAgCCGCGuGUa -5'
12335 5' -54.5 NC_003324.1 + 23215 0.66 0.73344
Target:  5'- uUGCCGCCaUUGCA--UCGGCGauggaaaagcgaCGCAUc -3'
miRNA:   3'- gGCGGUGG-AACGUuuAGCCGC------------GUGUA- -5'
12335 5' -54.5 NC_003324.1 + 25331 0.66 0.723791
Target:  5'- cCCGUCGCCUUGgcuuuaagggcggcCAggugcucgaaccgucAGUCGGCGCAgGc -3'
miRNA:   3'- -GGCGGUGGAAC--------------GU---------------UUAGCCGCGUgUa -5'
12335 5' -54.5 NC_003324.1 + 50003 0.66 0.722714
Target:  5'- aUCGCCGCCcacaAGAUCGGCaaGCGCu- -3'
miRNA:   3'- -GGCGGUGGaacgUUUAGCCG--CGUGua -5'
12335 5' -54.5 NC_003324.1 + 51546 0.66 0.711896
Target:  5'- gCUGCCGUCUUGCGGcaaCGGCGUucGCAa -3'
miRNA:   3'- -GGCGGUGGAACGUUua-GCCGCG--UGUa -5'
12335 5' -54.5 NC_003324.1 + 7413 0.67 0.700997
Target:  5'- aUCGUCAgCgUGCcc-UCGGCGCGCGg -3'
miRNA:   3'- -GGCGGUgGaACGuuuAGCCGCGUGUa -5'
12335 5' -54.5 NC_003324.1 + 9734 0.67 0.700997
Target:  5'- aCGCCGCCcaGCGcGUUGGCGUugccgGCGg -3'
miRNA:   3'- gGCGGUGGaaCGUuUAGCCGCG-----UGUa -5'
12335 5' -54.5 NC_003324.1 + 37995 0.67 0.700997
Target:  5'- gCgGCCauGCCggaGCGGuugCGGCGCACGg -3'
miRNA:   3'- -GgCGG--UGGaa-CGUUua-GCCGCGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.