Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12335 | 5' | -54.5 | NC_003324.1 | + | 23617 | 0.66 | 0.764947 |
Target: 5'- cCCGCCGCCacGCug--UGGgGCACc- -3' miRNA: 3'- -GGCGGUGGaaCGuuuaGCCgCGUGua -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 39747 | 0.66 | 0.764947 |
Target: 5'- -gGCgGCCUUGguGucCGGCgGCACGUg -3' miRNA: 3'- ggCGgUGGAACguUuaGCCG-CGUGUA- -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 21073 | 0.66 | 0.762882 |
Target: 5'- aCGCUGCCUUGUcggccgccgCGGCGCGu-- -3' miRNA: 3'- gGCGGUGGAACGuuua-----GCCGCGUgua -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 35719 | 0.66 | 0.761847 |
Target: 5'- cCCGUgACCUUGCGGAuacgcuucacgagcUCGuCGCGCu- -3' miRNA: 3'- -GGCGgUGGAACGUUU--------------AGCcGCGUGua -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 54363 | 0.66 | 0.754569 |
Target: 5'- aCGCagGCCUUccaGCAAcggcUCGGCGCugAUg -3' miRNA: 3'- gGCGg-UGGAA---CGUUu---AGCCGCGugUA- -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 14060 | 0.66 | 0.754569 |
Target: 5'- gCGCCAUCgcccgauccGCAGAUCGGCaaagcaGCGCu- -3' miRNA: 3'- gGCGGUGGaa-------CGUUUAGCCG------CGUGua -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 2506 | 0.66 | 0.753524 |
Target: 5'- gCCGCCGgCgucgGCGGcuucaucAUCGGCGUugGc -3' miRNA: 3'- -GGCGGUgGaa--CGUU-------UAGCCGCGugUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 20868 | 0.66 | 0.74828 |
Target: 5'- uCCGCCGCCUcGCcaacguuccggCGGUGgACAa -3' miRNA: 3'- -GGCGGUGGAaCGuuua-------GCCGCgUGUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 10183 | 0.66 | 0.744063 |
Target: 5'- cCCGUCAgCUucggcuagUGCucAUCGGCGC-CAa -3' miRNA: 3'- -GGCGGUgGA--------ACGuuUAGCCGCGuGUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 49720 | 0.66 | 0.744063 |
Target: 5'- cCCGCUGCCcUGCAGGcgggaugguUCagcgGGCGCACc- -3' miRNA: 3'- -GGCGGUGGaACGUUU---------AG----CCGCGUGua -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 24546 | 0.66 | 0.743005 |
Target: 5'- aCUGUCACCcuccccgagaaugUccaggacgUGCAGGUCGGCGCAa-- -3' miRNA: 3'- -GGCGGUGG-------------A--------ACGUUUAGCCGCGUgua -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 57200 | 0.66 | 0.73344 |
Target: 5'- gCGCCGugguuCCaugugguaUUGCAAGcUGGCGCACAa -3' miRNA: 3'- gGCGGU-----GG--------AACGUUUaGCCGCGUGUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 48471 | 0.66 | 0.73344 |
Target: 5'- gCCGCaGCCgaGCAGGUaGGCGC-CAa -3' miRNA: 3'- -GGCGgUGGaaCGUUUAgCCGCGuGUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 23215 | 0.66 | 0.73344 |
Target: 5'- uUGCCGCCaUUGCA--UCGGCGauggaaaagcgaCGCAUc -3' miRNA: 3'- gGCGGUGG-AACGUuuAGCCGC------------GUGUA- -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 25331 | 0.66 | 0.723791 |
Target: 5'- cCCGUCGCCUUGgcuuuaagggcggcCAggugcucgaaccgucAGUCGGCGCAgGc -3' miRNA: 3'- -GGCGGUGGAAC--------------GU---------------UUAGCCGCGUgUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 50003 | 0.66 | 0.722714 |
Target: 5'- aUCGCCGCCcacaAGAUCGGCaaGCGCu- -3' miRNA: 3'- -GGCGGUGGaacgUUUAGCCG--CGUGua -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 51546 | 0.66 | 0.711896 |
Target: 5'- gCUGCCGUCUUGCGGcaaCGGCGUucGCAa -3' miRNA: 3'- -GGCGGUGGAACGUUua-GCCGCG--UGUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 7413 | 0.67 | 0.700997 |
Target: 5'- aUCGUCAgCgUGCcc-UCGGCGCGCGg -3' miRNA: 3'- -GGCGGUgGaACGuuuAGCCGCGUGUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 9734 | 0.67 | 0.700997 |
Target: 5'- aCGCCGCCcaGCGcGUUGGCGUugccgGCGg -3' miRNA: 3'- gGCGGUGGaaCGUuUAGCCGCG-----UGUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 37995 | 0.67 | 0.700997 |
Target: 5'- gCgGCCauGCCggaGCGGuugCGGCGCACGg -3' miRNA: 3'- -GgCGG--UGGaa-CGUUua-GCCGCGUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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